{
    "resource": "modules",
    "release": "r1.1",
    "build": "2026-09-16",
    "generated": "2026-09-16T14:44:52+00:00",
    "count": 15,
    "data": [
        {
            "module": "genome",
            "label": "Genome assembly",
            "short": "Genome",
            "page": "genomeinfo.php",
            "desc": "Assembled genome (size, level, N50, BUSCO)"
        },
        {
            "module": "annotation",
            "label": "Gene annotation",
            "short": "Gene models",
            "page": "search.php",
            "desc": "Predicted gene models with CDS / transcript / protein sequences"
        },
        {
            "module": "function",
            "label": "Functional annotation",
            "short": "Function",
            "page": "domain_search.php",
            "desc": "InterPro, Pfam, PANTHER, GO and KEGG assignments"
        },
        {
            "module": "genefamily",
            "label": "Gene family (orthogroup)",
            "short": "Gene family",
            "page": "genefamily.php",
            "desc": "OrthoFinder orthogroups and TF / ubiquitin families"
        },
        {
            "module": "transcriptome",
            "label": "Bulk transcriptome",
            "short": "RNA-seq",
            "page": "/cytoscape/trans_data.php",
            "desc": "RNA-seq samples with expression values (TPM)"
        },
        {
            "module": "coexpression",
            "label": "Co-expression network",
            "short": "Co-expr.",
            "page": "/cytoscape/network.php",
            "desc": "Positive / negative co-expression edges"
        },
        {
            "module": "singlecell",
            "label": "Single-cell",
            "short": "Single-cell",
            "page": "sn_data.php",
            "desc": "scRNA-seq datasets, cell atlas and marker genes"
        },
        {
            "module": "proteome",
            "label": "Proteome",
            "short": "Proteome",
            "page": "proteomic_data.php",
            "desc": "Mass-spectrometry proteomics samples"
        },
        {
            "module": "epigenome",
            "label": "Epigenome",
            "short": "Epigenome",
            "page": "epigenomic_data.php",
            "desc": "DNA methylation, miRNA-seq, ATAC-seq, ChIP-seq"
        },
        {
            "module": "metagenome",
            "label": "Metagenome",
            "short": "Metagenome",
            "page": "metagenomic_data.php",
            "desc": "Host-associated metagenomic samples"
        },
        {
            "module": "phenotype",
            "label": "Phenotype",
            "short": "Phenotype",
            "page": "phenotype.php?class=all",
            "desc": "Trait measurements with geo-referencing"
        },
        {
            "module": "paleobiology",
            "label": "Paleobiology",
            "short": "Paleo",
            "page": "paleobiology.php",
            "desc": "Fossil occurrences and stratigraphic records"
        },
        {
            "module": "mitogenome",
            "label": "Mitogenome",
            "short": "Mitogenome",
            "page": "mitdata.php",
            "desc": "Mitochondrial gene annotations"
        },
        {
            "module": "TE",
            "label": "Transposable elements",
            "short": "TE",
            "page": "TE.php",
            "desc": "Repeat annotation of assembled genomes"
        },
        {
            "module": "jbrowse",
            "label": "Genome browser",
            "short": "JBrowse",
            "page": "jbrowse.php",
            "desc": "Interactive JBrowse track for the assembly"
        }
    ]
}