In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Nematostella vectensis - Whole_adults
The distribution of three methylation motif types in Nematostella vectensis
The distribution of three methylation motif types in different genomic elements in (Whole_adults) in Nematostella vectensis
Query Parameters
Species: Nematostella vectensis •
Stage: •
Tissue: Whole_adults •
Gene: XP_001633346.2
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5 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CG | NC_064040.1 | 8238305 | 8238305 | 1 | Promoter (2-3kb) | NC_064040.1 | 8235901 | 8242540 | 6640 | 2404 | XP_001633346.2 | vesicle transport through interaction with t-SNAREs homolog 1B | JBrowse |
| CHH | NC_064040.1 | 8238286 | 8238286 | 0 | Promoter (2-3kb) | NC_064040.1 | 8235901 | 8242540 | 6640 | 2385 | XP_001633346.2 | vesicle transport through interaction with t-SNAREs homolog 1B | JBrowse |
| CHH | NC_064040.1 | 8238300 | 8238300 | 0 | Promoter (2-3kb) | NC_064040.1 | 8235901 | 8242540 | 6640 | 2399 | XP_001633346.2 | vesicle transport through interaction with t-SNAREs homolog 1B | JBrowse |
| CHH | NC_064040.1 | 8238301 | 8238301 | 0 | Promoter (2-3kb) | NC_064040.1 | 8235901 | 8242540 | 6640 | 2400 | XP_001633346.2 | vesicle transport through interaction with t-SNAREs homolog 1B | JBrowse |
| CHG | NC_064040.1 | 8238298 | 8238298 | 0 | Promoter (2-3kb) | NC_064040.1 | 8235901 | 8242540 | 6640 | 2397 | XP_001633346.2 | vesicle transport through interaction with t-SNAREs homolog 1B | JBrowse |
