Single-cell Data

In this module, a brief summary of single-cell RNA-seq datasets are listed as follows.

ClassSpeciesProjectStudy AccessionEmb/OrgStageNumber of CellsReferences
HexacoralliaAcropora milleporaPRJNA1223412SRP563749Whole adultsAdult tissues/organs28,73641094138
HexacoralliaAcropora muricataPRJNA544778SRP199550Polypsregeneration17,27740269231
HexacoralliaMontipora capricornisPRJNA544778SRP199550PolypsAdult tissues/organs11,243Link
HexacoralliaMontipora foliosaPRJNA544778SRP199550PolypsAdult tissues/organs19,369Link
HexacoralliaNematostella vectensisPRJNA1063743SRP4832472 month animalAdult tissues/organs2,03239151009
HexacoralliaNematostella vectensisPRJNA1217498SRP560807body wall with mesenteries6-8 weeks adults--
HexacoralliaNematostella vectensisPRJNA1249376SRP577940whole-adultAdult tissues/organs~60,000-
HexacoralliaNematostella vectensisPRJNA1291744SRP601047embryoDevelopmental stages--
HexacoralliaNematostella vectensisPRJNA1327231SRP619054aggregatesEmbryos treated--
HexacoralliaNematostella vectensisPRJNA1331670SRP622332neoplasmAdult tissues/organs--
HexacoralliaNematostella vectensisPRJNA1331670SRP622332tentacleAdult tissues/organs--
HexacoralliaNematostella vectensisPRJNA645134SRP271116Bodywall, Mesentery, Pharynx, TentacleWhole organism2,03239151009
HexacoralliaNematostella vectensisPRJNA823660SRP367642Blastula-gastrula intermediateDevelopmental stages55,04236130520
HexacoralliaNematostella vectensisPRJNA903823SRP408911Gastrula Cellsnervous system37244953
HexacoralliaOculina arbusculaPRJNA1122932SRP513328whole organismSymbiotic state6,95140569035
HexacoralliaOculina patagonicaPRJNA1223412SRP563749Whole adultsAdult tissues/organs29,72341094138
HexacoralliaOrbicella faveolataPRJNA1180584SRP542438coral mucus and tissuebleaching stages12,719Link
HexacoralliaPocillopora verrucosaPRJNA544778SRP199550PolypsAdult tissues/organs11,493Link
HexacoralliaStylophora pistillataPRJNA1223412SRP563749Whole adultsAdult tissues/organs15,05341094138
HydrozoaClytia hemisphaericaPRJNA1220061SRP562097planula larvaAdult tissues/organs--
HydrozoaHydra vulgarisPRJNA614611SRP253820Whole polypAdult tissues/organs1,15232647059
HydrozoaHydra vulgarisPRJNA614614SRP253822Whole polypAdult tissues/organs1,15232647059
HydrozoaHydractinia symbiolongicarpusPRJNA1124116SRP514108Whole bodyAdult tissues/organs199,11340032860
HydrozoaHydractinia symbiolongicarpusPRJNA1263849SRP587019whole colonyAdult tissues/organs47,00041382277
HydrozoaHydractinia symbiolongicarpusPRJNA807936SRP360329whole colonyAdult tissues/organs-41262968
HydrozoaTurritopsis rubraPRJNA1045549SRP474384whole animalmedusa22,24539009560
ScyphozoaAurelia coeruleaPRJNA1011858SRP458012gastrodermisDevelopmental stages10000-
ScyphozoaAurelia coeruleaPRJNA1014937SRP468849whole organismDevelopmental stagesnot available38125018
ScyphozoaAurelia coeruleaPRJNA1041967SRP472811ephryaoceanacid treatment42,461Link
ScyphozoaAurelia coeruleaPRJNA1042913SRP473863podocystspodocyst-forming polyps17,97838133544
ScyphozoaAurelia coeruleaPRJNA1045549SRP474384whole animalmedusa18,93639009560
ScyphozoaAurelia coeruleaPRJNA1287281SRP598586RhopaliumAdult tissues/organs--
ScyphozoaAurelia coeruleaPRJNA884642SRP400888Whole adultsDevelopmental stages45,286Link

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