In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Nematostella vectensis - Whole_adults
The distribution of three methylation motif types in Nematostella vectensis
The distribution of three methylation motif types in different genomic elements in (Whole_adults) in Nematostella vectensis
Query Parameters
Species: Nematostella vectensis •
Stage: •
Tissue: Whole_adults •
Gene: XP_001642018.2
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6 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CG | NC_064036.1 | 15566484 | 15566484 | 0.333333333 | Intron | NC_064036.1 | 15562874 | 15570612 | 7739 | 3610 | XP_001642018.2 | E3 ubiquitin-protein ligase RING2 | JBrowse |
| CHH | NC_064036.1 | 15566459 | 15566459 | 0 | Exon | NC_064036.1 | 15562874 | 15570612 | 7739 | 3585 | XP_001642018.2 | E3 ubiquitin-protein ligase RING2 | JBrowse |
| CHH | NC_064036.1 | 15566478 | 15566478 | 0 | Intron | NC_064036.1 | 15562874 | 15570612 | 7739 | 3604 | XP_001642018.2 | E3 ubiquitin-protein ligase RING2 | JBrowse |
| CHH | NC_064036.1 | 15566479 | 15566479 | 0 | Intron | NC_064036.1 | 15562874 | 15570612 | 7739 | 3605 | XP_001642018.2 | E3 ubiquitin-protein ligase RING2 | JBrowse |
| CHH | NC_064036.1 | 15566490 | 15566490 | 0 | Intron | NC_064036.1 | 15562874 | 15570612 | 7739 | 3616 | XP_001642018.2 | E3 ubiquitin-protein ligase RING2 | JBrowse |
| CHG | NC_064036.1 | 15566461 | 15566461 | 0 | Exon | NC_064036.1 | 15562874 | 15570612 | 7739 | 3587 | XP_001642018.2 | E3 ubiquitin-protein ligase RING2 | JBrowse |
