In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_2
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_2) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_2 •
Gene: XP_074615547.1
📊
5 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133883.1 | 21333561 | 21333561 | 0.0 | Intron | NC_133883.1 | 21330573 | 21341191 | 10619 | 7630 | XP_074615547.1 | poly(U)-binding-splicing factor PUF60-like isoform X1 | JBrowse |
| CHH | NC_133883.1 | 21333572 | 21333572 | 0.0 | Intron | NC_133883.1 | 21330573 | 21341191 | 10619 | 7619 | XP_074615547.1 | poly(U)-binding-splicing factor PUF60-like isoform X1 | JBrowse |
| CHG | NC_133883.1 | 21333555 | 21333555 | 0.0 | Intron | NC_133883.1 | 21330573 | 21341191 | 10619 | 7636 | XP_074615547.1 | poly(U)-binding-splicing factor PUF60-like isoform X1 | JBrowse |
| CHG | NC_133883.1 | 21333578 | 21333578 | 0.0 | Intron | NC_133883.1 | 21330573 | 21341191 | 10619 | 7613 | XP_074615547.1 | poly(U)-binding-splicing factor PUF60-like isoform X1 | JBrowse |
| CG | NC_133883.1 | 21333574 | 21333574 | 1.0 | Intron | NC_133883.1 | 21330573 | 21341191 | 10619 | 7617 | XP_074615547.1 | poly(U)-binding-splicing factor PUF60-like isoform X1 | JBrowse |
