In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_2
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_2) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_2 •
Gene: XP_074616352.1
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9 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133884.1 | 18284044 | 18284044 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 5992 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CHH | NC_133884.1 | 18284056 | 18284056 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 5980 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CHH | NC_133884.1 | 18284064 | 18284064 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 5972 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CHG | NC_133884.1 | 18283896 | 18283896 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 6140 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CHG | NC_133884.1 | 18283915 | 18283915 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 6121 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CHG | NC_133884.1 | 18284073 | 18284073 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 5963 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CG | NC_133884.1 | 18283909 | 18283909 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 6127 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CG | NC_133884.1 | 18283920 | 18283920 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 6116 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
| CG | NC_133884.1 | 18284041 | 18284041 | 0.0 | Intron | NC_133884.1 | 18275852 | 18290036 | 14185 | 5995 | XP_074616352.1 | solute carrier family 15 member 4-like | JBrowse |
