In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_2
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_2) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_2 •
Gene: XP_074617983.1
📊
4 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133882.1 | 31106879 | 31106879 | 0.0 | Promoter | NC_133882.1 | 31097988 | 31107578 | 9591 | 699 | XP_074617983.1 | small RNA 2'-O-methyltransferase-like isoform X2 | JBrowse |
| CHG | NC_133882.1 | 31106889 | 31106889 | 0.0 | Promoter | NC_133882.1 | 31097988 | 31107578 | 9591 | 689 | XP_074617983.1 | small RNA 2'-O-methyltransferase-like isoform X2 | JBrowse |
| CHG | NC_133882.1 | 31106899 | 31106899 | 0.333333333333333 | Promoter | NC_133882.1 | 31097988 | 31107578 | 9591 | 679 | XP_074617983.1 | small RNA 2'-O-methyltransferase-like isoform X2 | JBrowse |
| CG | NC_133882.1 | 31106886 | 31106886 | 1.0 | Promoter | NC_133882.1 | 31097988 | 31107578 | 9591 | 692 | XP_074617983.1 | small RNA 2'-O-methyltransferase-like isoform X2 | JBrowse |
