In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_3
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_3) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_3 •
Gene: XP_074622664.1
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12 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133886.1 | 20099002 | 20099002 | 0.0 | Intron | NC_133886.1 | 20095756 | 20109290 | 13535 | 3246 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20099005 | 20099005 | 0.0 | Intron | NC_133886.1 | 20095756 | 20109290 | 13535 | 3249 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20099013 | 20099013 | 0.0 | Intron | NC_133886.1 | 20095756 | 20109290 | 13535 | 3257 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20099020 | 20099020 | 0.0 | Intron | NC_133886.1 | 20095756 | 20109290 | 13535 | 3264 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20099026 | 20099026 | 0.0 | Intron | NC_133886.1 | 20095756 | 20109290 | 13535 | 3270 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20108772 | 20108772 | 0.0 | 3' UTR | NC_133886.1 | 20095756 | 20109290 | 13535 | 13016 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20108775 | 20108775 | 0.0 | 3' UTR | NC_133886.1 | 20095756 | 20109290 | 13535 | 13019 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHH | NC_133886.1 | 20108788 | 20108788 | 0.0 | 3' UTR | NC_133886.1 | 20095756 | 20109290 | 13535 | 13032 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CHG | NC_133886.1 | 20108795 | 20108795 | 0.0 | 3' UTR | NC_133886.1 | 20095756 | 20109290 | 13535 | 13039 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CG | NC_133886.1 | 20099028 | 20099028 | 0.333333333333333 | Intron | NC_133886.1 | 20095756 | 20109290 | 13535 | 3272 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CG | NC_133886.1 | 20108762 | 20108762 | 0.0 | 3' UTR | NC_133886.1 | 20095756 | 20109290 | 13535 | 13006 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
| CG | NC_133886.1 | 20108765 | 20108765 | 0.0 | 3' UTR | NC_133886.1 | 20095756 | 20109290 | 13535 | 13009 | XP_074622664.1 | ankyrin and armadillo repeat-containing protein-like isoform X2 | JBrowse |
