In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_2
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_2) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_2 •
Gene: XP_074626089.1
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16 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133887.1 | 9587232 | 9587232 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4952 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587239 | 9587239 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4945 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587246 | 9587246 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4938 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587247 | 9587247 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4937 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587251 | 9587251 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4933 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587260 | 9587260 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4924 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587264 | 9587264 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4920 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587270 | 9587270 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4914 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587271 | 9587271 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4913 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587277 | 9587277 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4907 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587278 | 9587278 | 0.333333333333333 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4906 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587279 | 9587279 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4905 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHH | NC_133887.1 | 9587284 | 9587284 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4900 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CHG | NC_133887.1 | 9587241 | 9587241 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4943 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CG | NC_133887.1 | 9587217 | 9587217 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4967 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
| CG | NC_133887.1 | 9587244 | 9587244 | 0.0 | Intron | NC_133887.1 | 9586401 | 9592184 | 5784 | 4940 | XP_074626089.1 | high affinity cationic amino acid transporter 1-like | JBrowse |
