In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_2
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_2) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_2 •
Gene: XP_074626124.1
📊
9 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133887.1 | 8101440 | 8101440 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 144 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHH | NC_133887.1 | 8101444 | 8101444 | 0.333333333333333 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 148 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHH | NC_133887.1 | 8101450 | 8101450 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 154 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHH | NC_133887.1 | 8101454 | 8101454 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 158 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHH | NC_133887.1 | 8101465 | 8101465 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 169 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHH | NC_133887.1 | 8101475 | 8101475 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 179 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHH | NC_133887.1 | 8101477 | 8101477 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 181 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CHG | NC_133887.1 | 8101478 | 8101478 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 182 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
| CG | NC_133887.1 | 8101442 | 8101442 | 0.0 | Promoter | NC_133887.1 | 8101296 | 8115359 | 14064 | 146 | XP_074626124.1 | pre-mRNA-processing factor 17-like | JBrowse |
