In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Upperside_Treatment_3
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Upperside_Treatment_3) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Upperside_Treatment_3 •
Gene: XP_074630303.1
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3 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133889.1 | 1138643 | 1138643 | 0.0 | Exon | NC_133889.1 | 1133644 | 1143953 | 10310 | 4999 | XP_074630303.1 | tumor susceptibility gene 101 protein-like | JBrowse |
| CHH | NC_133889.1 | 1138644 | 1138644 | 0.0 | Intron | NC_133889.1 | 1133644 | 1143953 | 10310 | 5000 | XP_074630303.1 | tumor susceptibility gene 101 protein-like | JBrowse |
| CHG | NC_133889.1 | 1138650 | 1138650 | 0.0 | Intron | NC_133889.1 | 1133644 | 1143953 | 10310 | 5006 | XP_074630303.1 | tumor susceptibility gene 101 protein-like | JBrowse |
