In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_2
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_2) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_2 •
Gene: XP_074630748.1
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3 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133889.1 | 15000884 | 15000884 | 0.0 | Promoter | NC_133889.1 | 14999958 | 15043676 | 43719 | 926 | XP_074630748.1 | sodium channel protein 1 brain-like isoform X3 | JBrowse |
| CHG | NC_133889.1 | 15000887 | 15000887 | 0.0 | Promoter | NC_133889.1 | 14999958 | 15043676 | 43719 | 929 | XP_074630748.1 | sodium channel protein 1 brain-like isoform X3 | JBrowse |
| CHG | NC_133889.1 | 15006282 | 15006282 | 0.0 | Intron | NC_133889.1 | 14999958 | 15043676 | 43719 | 6324 | XP_074630748.1 | sodium channel protein 1 brain-like isoform X3 | JBrowse |
