In this module, we provide information on three methylation motif types and associations with protein-coding genes. User can submit interested gene to obtain relevant information, including motif type, genomic location and related genes.
Visualization for the distribution of Bisulfite-Seq in Acropora palmata - Polyp_Underside_Control_3
The distribution of three methylation motif types in Acropora palmata
The distribution of three methylation motif types in different genomic elements in (Polyp_Underside_Control_3) in Acropora palmata
Query Parameters
Species: Acropora palmata •
Stage: •
Tissue: Polyp_Underside_Control_3 •
Gene: XP_074638504.1
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8 methylation records found
| Motif type | Chr/Scaffold/Contig | start | end | methylation level | peak location | Chr/Scaffold/Contig | geneStart | geneEnd | geneLength | distanceToTSS | Protein id | Description | Visualization |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CHH | NC_133892.1 | 17483625 | 17483625 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 3900 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CHH | NC_133892.1 | 17483630 | 17483630 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 3905 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CHH | NC_133892.1 | 17483633 | 17483633 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 3908 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CHH | NC_133892.1 | 17483743 | 17483743 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 4018 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CHH | NC_133892.1 | 17483750 | 17483750 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 4025 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CHG | NC_133892.1 | 17483614 | 17483614 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 3889 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CG | NC_133892.1 | 17483623 | 17483623 | 1.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 3898 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
| CG | NC_133892.1 | 17483627 | 17483627 | 0.0 | Intron | NC_133892.1 | 17479725 | 17484651 | 4927 | 3902 | XP_074638504.1 | small ribosomal subunit protein eS10-like | JBrowse |
