BLAST Sequence Search

Search for similar sequences in Cnidaria genomes and transcriptomes using BLAST algorithms.

Sequence loaded. Query prefilled from PACUT_seq — Pocillopora_acuta_HIv2___RNAseq.g285.t2 (301 characters). Pick a database and press Run BLAST: the search is not started automatically, because a run takes one to two minutes.
BLAST Program & Database

* All databases searches the entire collection in a single pass (148 protein or 287 nucleotide databases) and typically takes one to two minutes. Searching a single species returns in a second or two, so choose one when you already know which species you need.

Query Sequence
Enter sequence in FASTA format 📋 Load Example
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Search Parameters
Expect Threshold
Scoring Matrix
Alignment Options
Results Display
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