BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
2680at6073Duplicated425.7192.0BRAKERIOWP00000013596.1Cilia- and flagella-associated protein 20JBrowse
2680at6073Duplicated425.7192.0g4133.t1.1Cilia- and flagella-associated protein 20JBrowse
2694at6073Duplicated270.5128.0BRAKERIOWP00000019148.1Large ribosomal subunit protein eL40 domainJBrowse
2694at6073Duplicated270.5128.0g6253.t1.1Large ribosomal subunit protein eL40 domainJBrowse
2715at6073Duplicated340.5146.0BRAKERIOWP00000020436.1ras-related protein Rab-2JBrowse
2715at6073Duplicated340.5146.0g5546.t1.1ras-related protein Rab-2JBrowse
2721at6073Duplicated1797.0944.0BRAKERIOWP00000008828.1glycine dehydrogenase (decarboxylating), mitochondrialJBrowse
2721at6073Duplicated1797.0944.0g7764.t1.1glycine dehydrogenase (decarboxylating), mitochondrialJBrowse
2729at6073Duplicated1014.1564.0BRAKERIOWP00000010494.1kelch-like protein 5JBrowse
2729at6073Duplicated1014.1564.0g10735.t1.1kelch-like protein 5JBrowse
2733at6073Duplicated483.7344.0BRAKERIOWP00000002984.1queuosine salvage proteinJBrowse
2733at6073Duplicated483.7344.0g16511.t1.1queuosine salvage proteinJBrowse
2778at6073Duplicated498.5279.0BRAKERIOWP00000006871.1cyclin-C-likeJBrowse
2778at6073Duplicated498.5279.0g10550.t1.1cyclin-C-likeJBrowse
2813at6073Duplicated211.5137.0BRAKERIOWP00000014967.1NADH dehydrogenase JBrowse
2813at6073Duplicated211.5137.0g1137.t1.1NADH dehydrogenase JBrowse
2837at6073Duplicated435.1294.0BRAKERIOWP00000001317.1epimerase family protein SDR39U1-likeJBrowse
2837at6073Duplicated435.1294.0g10045.t1.1epimerase family protein SDR39U1-likeJBrowse
2841at6073Duplicated410.2443.0BRAKERIOWP00000012873.1F-box/LRR-repeat protein 2-likeJBrowse
2841at6073Duplicated410.2443.0g6090.t1.1F-box/LRR-repeat protein 2-likeJBrowse
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