BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
2853at6073Fragmented571.6353.0BRAKERIOWP00000007267.1WD repeat-containing protein 20JBrowse
2867at6073Duplicated1627.41302.0BRAKERIOWP00000009876.1uncharacterized protein LOC113684304 isoform X1JBrowse
2867at6073Duplicated1627.41302.0g8122.t1.1uncharacterized protein LOC113684304 isoform X1JBrowse
2886at6073Duplicated148.2129.0BRAKERIOWP00000007768.1protein LTO1 homologJBrowse
2886at6073Duplicated148.2129.0g18798.t1.1protein LTO1 homologJBrowse
2913at6073Fragmented354.5181.0BRAKERIOWP00000019276.1homeobox protein SIX1JBrowse
2934at6073Duplicated1333.4612.0BRAKERIOWP00000011859.1V-type proton ATPase catalytic subunit AJBrowse
2934at6073Duplicated1333.4612.0g1881.t1.1V-type proton ATPase catalytic subunit AJBrowse
2987at6073Duplicated1564.9954.0BRAKERIOWP00000011436.1Vacuolar protein sorting-associated protein 18JBrowse
2987at6073Duplicated1564.9954.0g4767.t1.1Vacuolar protein sorting-associated protein 18JBrowse
2993at6073Duplicated859.4534.0BRAKERIOWP00000001325.1protein REDUCED WALL ACETYLATION 1JBrowse
2993at6073Duplicated859.4534.0g10028.t1.1protein REDUCED WALL ACETYLATION 1JBrowse
3019at6073Duplicated339.3210.0BRAKERIOWP00000008551.1cilia- and flagella-associated protein 107-likeJBrowse
3019at6073Duplicated339.3210.0g15216.t1.1cilia- and flagella-associated protein 107-likeJBrowse
3025at6073Duplicated409.7218.0BRAKERIOWP00000006915.1proteasome subunit beta type-1-AJBrowse
3025at6073Duplicated409.7218.0g18663.t1.1proteasome subunit beta type-1-AJBrowse
3028at6073Duplicated130.1108.0BRAKERIOWP00000007140.1replication protein A 14 kDa subunit-likeJBrowse
3028at6073Duplicated130.1108.0g6493.t1.1replication protein A 14 kDa subunit-likeJBrowse
3034at6073Duplicated595.3345.0BRAKERIOWP00000011788.1galactose-1-phosphate uridylyltransferase-likeJBrowse
3034at6073Duplicated595.3345.0g16727.t1.1galactose-1-phosphate uridylyltransferase-likeJBrowse
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