Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 76629at6073 | Complete | 438.9 | 265 | BRAKERHOCP00005012568.1 | ubiquitin recognition factor in ER-associated degradation protein 1 | JBrowse |
| 76633at6073 | Complete | 908.6 | 1230 | BRAKERHOCP00005014915.1 | putative ATP-dependent RNA helicase TDRD12 | JBrowse |
| 76646at6073 | Complete | 240.2 | 300 | BRAKERHOCP00005019964.1 | WD repeat-containing protein 53 | JBrowse |
| 76650at6073 | Complete | 427.2 | 457 | BRAKERHOCP00005014614.1 | biotin--protein ligase | JBrowse |
| 76651at6073 | Complete | 333.4 | 437 | BRAKERHOCP00005001215.1 | la-related protein 6 | JBrowse |
| 76665at6073 | Complete | 1039.8 | 858 | BRAKERHOCP00005000403.1 | coiled-coil and C2 domain-containing protein 1-like | JBrowse |
| 76666at6073 | Fragmented | 1332.0 | 1228 | BRAKERHOCP00005004971.1 | rho GTPase-activating protein 45-like | JBrowse |
| 76690at6073 | Complete | 145.1 | 98 | BRAKERHOCP00005010513.1 | protein boule-like | JBrowse |
| 76701at6073 | Complete | 628.2 | 568 | BRAKERHOCP00005004394.1 | Calcium homeostasis endoplasmic reticulum | JBrowse |
| 76707at6073 | Complete | 328.2 | 326 | BRAKERHOCP00005016831.1 | coiled-coil domain-containing protein 149 | JBrowse |
| 76720at6073 | Fragmented | 279.8 | 302 | BRAKERHOCP00005002046.1 | rDNA transcriptional regulator pol5-like | JBrowse |
| 76721at6073 | Fragmented | 340.8 | 404 | BRAKERHOCP00005012663.1 | uncharacterized protein LOC116294853 | JBrowse |
| 76734at6073 | Fragmented | 399.5 | 310 | BRAKERHOCP00005008303.1 | RING finger protein 150 | JBrowse |
| 76737at6073 | Complete | 327.7 | 282 | BRAKERHOCP00005007392.1 | histone PARylation factor 1 | JBrowse |
| 76744at6073 | Complete | 831.0 | 478 | BRAKERHOCP00005020646.1 | mothers against decapentaplegic homolog 4 | JBrowse |
| 76762at6073 | Fragmented | 104.5 | 128 | BRAKERHOCP00005009877.1 | SUN domain-containing protein 3 isoform X1 | JBrowse |
| 76775at6073 | Fragmented | 264.1 | 258 | BRAKERHOCP00005018226.1 | Xyloside xylosyltransferase 1 | JBrowse |
| 76778at6073 | Complete | 415.1 | 446 | BRAKERHOCP00005011047.1 | malate dehydrogenase 1B | JBrowse |
| 76787at6073 | Complete | 586.7 | 525 | BRAKERHOCP00005011858.1 | Far upstream element-binding protein 3 | JBrowse |
| 76788at6073 | Fragmented | 320.0 | 218 | BRAKERHOCP00005006888.1 | hsc70-interacting protein | JBrowse |