BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
3050at6073Duplicated444.7343.0BRAKERIOWP00000002092.1Peroxisomal biogenesis factor 3JBrowse
3050at6073Duplicated444.7343.0g10791.t1.1Peroxisomal biogenesis factor 3JBrowse
3060at6073Duplicated558.0398.0BRAKERIOWP00000014754.1pyruvate dehydrogenase JBrowse
3060at6073Duplicated558.0398.0g4069.t1.1pyruvate dehydrogenase JBrowse
3099at6073Duplicated649.6507.0BRAKERIOWP00000009365.1prolyl 4-hydroxylase subunit alpha-1JBrowse
3099at6073Duplicated649.6507.0g3798.t3.1prolyl 4-hydroxylase subunit alpha-1JBrowse
3099at6073Duplicated642.5507.0BRAKERIOWP00000009367.1prolyl 4-hydroxylase subunit alpha-1JBrowse
3099at6073Duplicated642.5507.0g3798.t1.1prolyl 4-hydroxylase subunit alpha-1JBrowse
3099at6073Duplicated635.3507.0BRAKERIOWP00000009366.1prolyl 4-hydroxylase subunit alpha-1JBrowse
3099at6073Duplicated635.3507.0g3798.t2.1prolyl 4-hydroxylase subunit alpha-1JBrowse
3107at6073Duplicated203.1316.0BRAKERIOWP00000010266.1Transcription factor SOX-17JBrowse
3107at6073Duplicated203.1316.0g6130.t1.1Transcription factor SOX-17JBrowse
3112at6073Duplicated648.0475.0BRAKERIOWP00000000712.1fukutin-related protein-likeJBrowse
3112at6073Duplicated648.0475.0g15085.t1.1fukutin-related protein-likeJBrowse
3114at6073Duplicated443.7282.0BRAKERIOWP00000006323.1General transcription factor IIH subunit 3JBrowse
3114at6073Duplicated443.7282.0g3258.t1.1General transcription factor IIH subunit 3JBrowse
3139at6073Duplicated498.2372.0BRAKERIOWP00000005239.1THUMP domain-containing 3JBrowse
3139at6073Duplicated498.2372.0g572.t1.1THUMP domain-containing 3JBrowse
3142at6073Duplicated185.6173.0BRAKERIOWP00000004562.1homeobox protein MOX-1JBrowse
3142at6073Duplicated185.6173.0g17209.t1.1homeobox protein MOX-1JBrowse
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