BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
75846at6073Complete410.0284BRAKERIOWP00000015704.1transmembrane protein 19JBrowse
75851at6073Fragmented567.3543BRAKERIOWP00000018293.1WD repeat-containing protein 91JBrowse
75852at6073Complete643.8487BRAKERIOWP00000015105.1anaphase-promoting complex subunit 7JBrowse
75862at6073Fragmented409.4353BRAKERIOWP00000013911.1F-box/LRR-repeat protein 5JBrowse
75871at6073Complete1081.4821BRAKERIOWP00000003096.1pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3-likeJBrowse
75882at6073Complete650.1393BRAKERIOWP00000007757.1membralin-like isoform X1JBrowse
75888at6073Fragmented283.7235BRAKERIOWP00000005646.1stAR-related lipid transfer protein 7, mitochondrialJBrowse
75900at6073Complete398.3341BRAKERIOWP00000012178.1AAR2 homologJBrowse
75908at6073Complete465.8434BRAKERIOWP00000008702.1uncharacterized protein LOC116298666JBrowse
75910at6073Complete173.7133BRAKERIOWP00000007183.1Cytochrome c oxidase subunitJBrowse
75912at6073Complete506.9333BRAKERIOWP00000011197.1E3 ubiquitin-protein ligase RING2-likeJBrowse
75915at6073Complete599.9450BRAKERIOWP00000008963.1phospholipase D3-likeJBrowse
75916at6073Complete602.1586BRAKERIOWP00000005697.1protein SERAC1-likeJBrowse
75918at6073Complete609.1499BRAKERIOWP00000005213.1cell division cycle 7-related protein kinaseJBrowse
75937at6073Complete713.9560BRAKERIOWP00000016535.1serine/threonine-protein kinase greatwall-likeJBrowse
75940at6073Complete1044.5831BRAKERIOWP00000002972.1exostosin-like 3JBrowse
75949at6073Complete315.9243BRAKERIOWP00000003120.1syntaxin-7-likeJBrowse
75956at6073Complete389.3350BRAKERIOWP00000011216.1Protein Wnt-6JBrowse
75959at6073Complete512.9375BRAKERIOWP00000015721.1Arginyl-tRNA--protein transferase 1JBrowse
75962at6073Complete196.6156BRAKERIOWP00000003460.1mediator of RNA polymerase II transcription subunit 19JBrowse
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