Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 77177at6073 | Complete | 221.6 | 319 | BRAKERHOCP00005015692.1 | HAUS augmin-like complex subunit 4 | JBrowse |
| 77182at6073 | Complete | 255.9 | 263 | BRAKERHOCP00005000973.1 | transcription initiation factor IIA subunit 1 | JBrowse |
| 77199at6073 | Complete | 258.2 | 237 | BRAKERHOCP00005006929.1 | reticulon-1-A | JBrowse |
| 77200at6073 | Fragmented | 206.7 | 278 | BRAKERHOCP00005007548.1 | scaffold protein salvador-like | JBrowse |
| 77217at6073 | Complete | 341.0 | 253 | BRAKERHOCP00005009708.1 | ribosomal L1 domain-containing protein 1 | JBrowse |
| 77220at6073 | Fragmented | 174.2 | 188 | BRAKERHOCP00005014294.1 | uncharacterized protein LOC114517244 | JBrowse |
| 77225at6073 | Fragmented | 1021.1 | 747 | BRAKERHOCP00005012516.1 | abnormal spindle-like microcephaly-associated protein | JBrowse |
| 77227at6073 | Fragmented | 329.7 | 350 | BRAKERHOCP00005009714.1 | ETS translocation variant 1 | JBrowse |
| 77228at6073 | Complete | 284.5 | 302 | BRAKERHOCP00005006056.1 | transcription factor AP-1-like | JBrowse |
| 77240at6073 | Complete | 356.5 | 666 | BRAKERHOCP00005004933.1 | protein PAT1 homolog 1 | JBrowse |
| 77246at6073 | Complete | 328.8 | 361 | BRAKERHOCP00005000100.1 | Stromal membrane-associated protein 1 | JBrowse |
| 77250at6073 | Fragmented | 533.3 | 697 | BRAKERHOCP00005013613.1 | rab GTPase-binding effector protein 1 | JBrowse |
| 77264at6073 | Complete | 730.6 | 747 | BRAKERHOCP00005014839.1 | RNA-binding protein 28 | JBrowse |
| 77285at6073 | Complete | 90.0 | 99 | BRAKERHOCP00005016416.1 | 39S ribosomal protein L52, mitochondrial-like | JBrowse |
| 77287at6073 | Complete | 138.1 | 147 | BRAKERHOCP00005005615.1 | uncharacterized protein LOC110238137 | JBrowse |
| 77288at6073 | Fragmented | 246.9 | 360 | BRAKERHOCP00005005038.1 | TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L | JBrowse |
| 77312at6073 | Complete | 575.2 | 445 | BRAKERHOCP00005018790.1 | probable ATP-dependent RNA helicase DDX20 | JBrowse |
| 77313at6073 | Complete | 253.6 | 705 | BRAKERHOCP00005010692.1 | axin-1 | JBrowse |
| 77318at6073 | Complete | 187.4 | 265 | BRAKERHOCP00005011407.1 | FACT complex subunit SSRP1-like | JBrowse |
| 77333at6073 | Fragmented | 227.3 | 423 | BRAKERHOCP00005013456.1 | anaphase-promoting complex subunit 5 | JBrowse |
