BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
3142at6073Duplicated185.3173.09638_t.1homeobox protein MOX-1JBrowse
3142at6073Duplicated185.3173.0BRAKERIOWP00000004553.1homeobox protein MOX-1JBrowse
3154at6073Duplicated267.7152.0BRAKERIOWP00000002690.1LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP30 homologJBrowse
3154at6073Duplicated267.7152.0g2770.t1.1LOW QUALITY PROTEIN: histone deacetylase complex subunit SAP30 homologJBrowse
3172at6073Duplicated455.3313.0BRAKERIOWP00000007730.1PR domain zinc finger protein 12JBrowse
3172at6073Duplicated455.3313.0g8613.t1.1PR domain zinc finger protein 12JBrowse
3185at6073Duplicated755.2415.0BRAKERIOWP00000012353.1FAD/NAD(P)-binding domainJBrowse
3185at6073Duplicated755.2415.0g12006.t1.1FAD/NAD(P)-binding domainJBrowse
3192at6073Duplicated322.1157.0BRAKERIOWP00000000871.1N-alpha-acetyltransferase 50JBrowse
3192at6073Duplicated322.1157.0g1751.t1.1N-alpha-acetyltransferase 50JBrowse
3247at6073Duplicated556.0316.0BRAKERIOWP00000015153.1Geranylgeranyl transferase type-1 subunit betaJBrowse
3247at6073Duplicated556.0316.0g17262.t1.1Geranylgeranyl transferase type-1 subunit betaJBrowse
3252at6073Duplicated616.9340.0BRAKERIOWP00000002297.1nucleoporin SEH1-likeJBrowse
3252at6073Duplicated616.9340.0g8960.t1.1nucleoporin SEH1-likeJBrowse
3337at6073Duplicated994.0503.0BRAKERIOWP00000000902.1pre-mRNA-processing factor 19JBrowse
3337at6073Duplicated994.0503.0g3179.t1.1pre-mRNA-processing factor 19JBrowse
3346at6073Duplicated584.9299.0BRAKERIOWP00000002969.1mitochondrial 2-oxoglutarate/malate carrier proteinJBrowse
3346at6073Duplicated584.9299.0g7454.t1.1mitochondrial 2-oxoglutarate/malate carrier proteinJBrowse
3482at6073Duplicated550.3410.0BRAKERIOWP00000003041.1E3 ubiquitin-protein ligase MYLIPJBrowse
3482at6073Duplicated550.3410.0g1340.t1.1E3 ubiquitin-protein ligase MYLIPJBrowse
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