BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
76707at6073Complete398.2334BRAKERIOWP00000005480.1coiled-coil domain-containing protein 149JBrowse
76720at6073Fragmented492.5407BRAKERIOWP00000016506.1rDNA transcriptional regulator pol5-likeJBrowse
76721at6073Fragmented447.2412BRAKERIOWP00000000006.1uncharacterized protein LOC116294853JBrowse
76737at6073Fragmented276.3242BRAKERIOWP00000009717.1histone PARylation factor 1JBrowse
76744at6073Complete817.5480BRAKERIOWP00000018803.1mothers against decapentaplegic homolog 4JBrowse
76758at6073Complete209.5203BRAKERIOWP00000000662.1uncharacterized protein C1orf146-likeJBrowse
76762at6073Fragmented143.6106BRAKERIOWP00000002221.1SUN domain-containing protein 3 isoform X1JBrowse
76773at6073Complete184.2135BRAKERIOWP00000018464.1transmembrane protein 18JBrowse
76775at6073Complete400.2309BRAKERIOWP00000004185.1Xyloside xylosyltransferase 1JBrowse
76776at6073Fragmented260.8221BRAKERIOWP00000011126.1transcription termination factor 3, mitochondrial-likeJBrowse
76778at6073Complete539.7447BRAKERIOWP00000008995.1malate dehydrogenase 1BJBrowse
76787at6073Complete452.4524BRAKERIOWP00000004490.1Far upstream element-binding protein 3JBrowse
76788at6073Complete314.8270BRAKERIOWP00000011748.1hsc70-interacting proteinJBrowse
76791at6073Complete464.4440BRAKERIOWP00000010230.1sedoheptulokinase-likeJBrowse
76792at6073Fragmented383.8258BRAKERIOWP00000017426.1STAM-binding protein-likeJBrowse
76797at6073Complete545.3539BRAKERIOWP00000011027.1nuclear pore complex protein Nup88-likeJBrowse
76805at6073Complete292.1336BRAKERIOWP00000010213.1uncharacterized protein LOC130614738 isoform X1JBrowse
76820at6073Complete626.9454BRAKERIOWP00000013936.1pectin acetylesterase 5JBrowse
76840at6073Complete508.1430BRAKERIOWP00000004874.1SHC-transforming protein 1JBrowse
76843at6073Complete299.4244BRAKERIOWP00000015179.1leucine-rich repeat-containing protein 59JBrowse
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