BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
76846at6073Complete1717.01653BRAKERIOWP00000013197.1gamma-tubulin complex component 6JBrowse
76853at6073Fragmented613.2866BRAKERIOWP00000013424.1RB1-inducible coiled-coil protein 1JBrowse
76855at6073Complete394.2316BRAKERIOWP00000015382.1Protein kinase C and casein kinase substrate in neuronsJBrowse
76861at6073Complete611.3418BRAKERIOWP00000000630.1probable protein phosphatase 2C 21JBrowse
76864at6073Complete166.0205BRAKERIOWP00000007292.1meiotic recombination protein REC114JBrowse
76873at6073Complete1178.31098BRAKERIOWP00000007796.1Zinc finger MIZ domain-containing protein 1JBrowse
76877at6073Complete555.1461BRAKERIOWP00000003681.1ankyrin repeat and LEM domain-containing protein 1JBrowse
76878at6073Complete472.6325BRAKERIOWP00000015042.1signal peptide peptidase-like 3JBrowse
76879at6073Complete959.7736BRAKERIOWP00000009884.1leucine-rich repeat-containing G-protein coupled receptor 5 isoform X1JBrowse
76889at6073Complete788.1871BRAKERIOWP00000003647.1testis-expressed protein 2JBrowse
76894at6073Complete698.2617BRAKERIOWP00000013224.1serine/threonine-protein kinase unc-51JBrowse
76901at6073Complete491.3490BRAKERIOWP00000001994.1uncharacterized protein KIAA2013 homologJBrowse
76905at6073Complete344.1280BRAKERIOWP00000011746.1zinc finger protein GLI2-likeJBrowse
76914at6073Complete366.1395BRAKERIOWP00000012348.1E3 ubiquitin-protein ligase TRAIPJBrowse
76915at6073Complete882.1737BRAKERIOWP00000007222.1WD repeat-containing protein 47JBrowse
76922at6073Complete409.1336BRAKERIOWP00000001048.1UBX domain-containing protein 1JBrowse
76925at6073Complete1856.21494BRAKERIOWP00000001383.1uncharacterized protein LOC116302959JBrowse
76928at6073Complete273.3194BRAKERIOWP00000006710.1E3 ubiquitin-protein ligase march2JBrowse
76929at6073Complete193.7165BRAKERIOWP00000005808.1non-histone chromosomal protein 6JBrowse
76930at6073Complete604.8598BRAKERIOWP00000006994.1DNA replication factor Cdt1JBrowse
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