BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77182at6073Complete290.8267BRAKERIOWP00000009582.1transcription initiation factor IIA subunit 1JBrowse
77184at6073Complete752.1599BRAKERIOWP00000013239.1transcriptional protein SWT1-likeJBrowse
77199at6073Complete309.1230BRAKERIOWP00000002515.1reticulon-1-AJBrowse
77200at6073Fragmented254.7395BRAKERIOWP00000001287.1scaffold protein salvador-likeJBrowse
77208at6073Fragmented320.4116BRAKERIOWP00000005263.1ribonuclease IIIJBrowse
77217at6073Complete343.6250BRAKERIOWP00000018061.1ribosomal L1 domain-containing protein 1JBrowse
77220at6073Complete280.0272BRAKERIOWP00000013062.1uncharacterized protein LOC114517244JBrowse
77225at6073Complete2656.42104BRAKERIOWP00000001451.1abnormal spindle-like microcephaly-associated proteinJBrowse
77227at6073Complete364.3398BRAKERIOWP00000011777.1ETS translocation variant 1JBrowse
77228at6073Complete319.8303BRAKERIOWP00000012907.1transcription factor AP-1-likeJBrowse
77240at6073Complete545.9740BRAKERIOWP00000012165.1protein PAT1 homolog 1JBrowse
77246at6073Complete381.9361BRAKERIOWP00000000011.1Stromal membrane-associated protein 1JBrowse
77250at6073Fragmented548.8690BRAKERIOWP00000009485.1rab GTPase-binding effector protein 1JBrowse
77264at6073Complete878.9755BRAKERIOWP00000010272.1RNA-binding protein 28JBrowse
77273at6073Complete1629.91519BRAKERIOWP00000001478.1androglobin-likeJBrowse
77285at6073Fragmented111.692BRAKERIOWP00000016332.139S ribosomal protein L52, mitochondrial-likeJBrowse
77287at6073Complete68.8141BRAKERIOWP00000010885.1uncharacterized protein LOC110238137JBrowse
77288at6073Complete478.5440BRAKERIOWP00000015793.1TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6LJBrowse
77294at6073Complete813.4716BRAKERIOWP00000018809.1Serine/threonine-protein phosphatase 4 regulatory subunit 4JBrowse
77312at6073Complete645.3474BRAKERIOWP00000009220.1probable ATP-dependent RNA helicase DDX20JBrowse
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