BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77435at6073Complete337.4333BRAKERIOWP00000005947.1nuclear cap-binding protein subunit 3JBrowse
77439at6073Complete603.3731BRAKERIOWP00000004310.1coiled-coil domain-containing protein 178JBrowse
77448at6073Complete272.8251BRAKERIOWP00000014565.1Cleavage inducing molecular chaperoneJBrowse
77456at6073Complete800.1693BRAKERIOWP00000016279.1MYCBP-associated proteinJBrowse
77470at6073Fragmented255.2301BRAKERIOWP00000000656.1cyclic AMP-dependent transcription factor ATF-2JBrowse
77476at6073Complete411.1551BRAKERIOWP00000019862.1uncharacterized protein LOC116293469JBrowse
77495at6073Complete706.0506BRAKERIOWP00000001834.1cilia- and flagella-associated protein 53JBrowse
77496at6073Complete843.4847BRAKERIOWP00000005377.1caskin-2JBrowse
77499at6073Complete546.9450BRAKERIOWP00000018746.1AN1-type zinc finger protein 4JBrowse
77502at6073Complete446.2319BRAKERIOWP00000001810.1Peptidyl-prolyl cis-trans isomeraseJBrowse
77505at6073Complete532.9569BRAKERIOWP00000006292.1HAUS augmin-like complex subunit 5JBrowse
77509at6073Complete775.31056BRAKERIOWP00000003729.1uncharacterized protein KIAA0825-likeJBrowse
77510at6073Complete805.3642BRAKERIOWP00000009556.1trichohyalinJBrowse
77513at6073Complete342.7293BRAKERIOWP00000007347.1replication stress response regulator SDE2JBrowse
77521at6073Complete422.2399BRAKERIOWP00000007834.1uncharacterized protein LOC114524962JBrowse
77527at6073Complete321.7279BRAKERIOWP00000003926.1protein FAM76A-likeJBrowse
77528at6073Fragmented369.7282BRAKERIOWP00000016986.1Leucine-rich repeat-containing protein 56JBrowse
77540at6073Complete553.7476BRAKERIOWP00000007021.1rhotekin-2-likeJBrowse
77545at6073Fragmented345.6254BRAKERIOWP00000012847.1alpha-tubulin N-acetyltransferaseJBrowse
77566at6073Complete336.6335BRAKERIOWP00000005728.1BUD13 homologJBrowse
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