Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 3559at6073 | Duplicated | 817.9 | 411.0 | BRAKERHOCP00005020468.1 | putative ATP-dependent RNA helicase ddx6 | JBrowse |
| 3559at6073 | Duplicated | 817.9 | 411.0 | g8440.t1.1 | putative ATP-dependent RNA helicase ddx6 | JBrowse |
| 3561at6073 | Fragmented | 143.3 | 231.0 | BRAKERHOCP00005010590.1 | spermatogenesis-associated protein 48 | JBrowse |
| 3576at6073 | Fragmented | 458.0 | 259.0 | BRAKERHOCP00005015898.1 | Ornithine carbamoyltransferase, mitochondrial | JBrowse |
| 3582at6073 | Duplicated | 951.7 | 438.0 | BRAKERHOCP00005019653.1 | AP-2 complex subunit mu | JBrowse |
| 3582at6073 | Duplicated | 951.7 | 438.0 | g9781.t1.1 | AP-2 complex subunit mu | JBrowse |
| 3598at6073 | Duplicated | 570.2 | 263.0 | BRAKERHOCP00005001071.1 | E3 ubiquitin-protein ligase SIAH1 | JBrowse |
| 3598at6073 | Duplicated | 570.2 | 263.0 | g7146.t1.1 | E3 ubiquitin-protein ligase SIAH1 | JBrowse |
| 3641at6073 | Fragmented | 183.3 | 153.0 | BRAKERHOCP00005013245.1 | 39S ribosomal protein L18, mitochondrial-like | JBrowse |
| 3663at6073 | Duplicated | 1267.4 | 859.0 | BRAKERHOCP00005020769.1 | Peripheral plasma membrane CASK | JBrowse |
| 3663at6073 | Duplicated | 1267.4 | 859.0 | g8160.t1.1 | Peripheral plasma membrane CASK | JBrowse |
| 3691at6073 | Duplicated | 519.7 | 358.0 | BRAKERHOCP00005010571.1 | Soluble calcium-activated nucleotidase 1 | JBrowse |
| 3691at6073 | Duplicated | 519.7 | 358.0 | g16005.t1.1 | Soluble calcium-activated nucleotidase 1 | JBrowse |
| 3707at6073 | Duplicated | 354.0 | 266.0 | BRAKERHOCP00005013354.1 | protein rogdi homolog | JBrowse |
| 3707at6073 | Duplicated | 354.0 | 266.0 | g19354.t2.1 | protein rogdi homolog | JBrowse |
| 3738at6073 | Duplicated | 530.5 | 393.0 | BRAKERHOCP00005013665.1 | E3 ubiquitin-protein ligase pellino homolog 1 | JBrowse |
| 3738at6073 | Duplicated | 530.5 | 393.0 | g19885.t1.1 | E3 ubiquitin-protein ligase pellino homolog 1 | JBrowse |
| 3752at6073 | Duplicated | 186.5 | 84.0 | BRAKERHOCP00005009185.1 | ubiquitin-fold modifier 1 | JBrowse |
| 3752at6073 | Duplicated | 186.5 | 84.0 | g2310.t1.1 | ubiquitin-fold modifier 1 | JBrowse |
| 3768at6073 | Duplicated | 1129.2 | 619.0 | BRAKERHOCP00005016456.1 | glycogen | JBrowse |