BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
3490at6073Duplicated377.1275.0BRAKERIOWP00000009804.1protein FAM166B-likeJBrowse
3490at6073Duplicated377.1275.0g8682.t1.1protein FAM166B-likeJBrowse
3507at6073Duplicated286.2172.0BRAKERIOWP00000004146.1lactoylglutathione lyase-likeJBrowse
3507at6073Duplicated286.2172.0g20124.t1.1lactoylglutathione lyase-likeJBrowse
3517at6073Duplicated335.4270.0BRAKERIOWP00000010954.139S ribosomal protein L38, mitochondrial-likeJBrowse
3517at6073Duplicated335.4270.0g2152.t1.139S ribosomal protein L38, mitochondrial-likeJBrowse
3527at6073Duplicated943.1690.0BRAKERIOWP00000007177.1short transient receptor potential channel 4-associated proteinJBrowse
3527at6073Duplicated943.1690.0g18836.t1.1short transient receptor potential channel 4-associated proteinJBrowse
3559at6073Duplicated885.2431.0BRAKERIOWP00000011484.1putative ATP-dependent RNA helicase ddx6JBrowse
3559at6073Duplicated885.2431.0g17591.t1.1putative ATP-dependent RNA helicase ddx6JBrowse
3561at6073Duplicated259.4347.0BRAKERIOWP00000016261.1spermatogenesis-associated protein 48JBrowse
3561at6073Duplicated259.4347.0g19673.t1.1spermatogenesis-associated protein 48JBrowse
3570at6073Duplicated383.1167.0BRAKERIOWP00000010628.1ras-related protein Rab-13 isoform X1JBrowse
3570at6073Duplicated383.1167.0g19391.t1.1ras-related protein Rab-13 isoform X1JBrowse
3582at6073Duplicated938.2438.0BRAKERIOWP00000001558.1AP-2 complex subunit muJBrowse
3582at6073Duplicated938.2438.0g20109.t1.1AP-2 complex subunit muJBrowse
3598at6073Duplicated593.1267.0BRAKERIOWP00000015432.1E3 ubiquitin-protein ligase SIAH1JBrowse
3598at6073Duplicated593.1267.0g20606.t1.1E3 ubiquitin-protein ligase SIAH1JBrowse
3641at6073Duplicated231.9167.0BRAKERIOWP00000004979.139S ribosomal protein L18, mitochondrial-likeJBrowse
3641at6073Duplicated231.9167.0g17766.t1.139S ribosomal protein L18, mitochondrial-likeJBrowse
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