BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
3682at6073Duplicated340.5289.0BRAKERIOWP00000016778.1metaxin-1JBrowse
3682at6073Duplicated340.5289.0g8178.t1.1metaxin-1JBrowse
3691at6073Duplicated548.0338.0BRAKERIOWP00000006868.1Soluble calcium-activated nucleotidase 1JBrowse
3691at6073Duplicated548.0338.0g10549.t1.1Soluble calcium-activated nucleotidase 1JBrowse
3707at6073Duplicated273.5225.0BRAKERIOWP00000004944.1protein rogdi homologJBrowse
3707at6073Duplicated273.5225.0g12048.t1.1protein rogdi homologJBrowse
3738at6073Duplicated588.1399.0BRAKERIOWP00000006603.1E3 ubiquitin-protein ligase pellino homolog 1JBrowse
3738at6073Duplicated588.1399.0g9979.t1.1E3 ubiquitin-protein ligase pellino homolog 1JBrowse
3752at6073Duplicated141.768.0BRAKERIOWP00000005901.1ubiquitin-fold modifier 1JBrowse
3752at6073Duplicated141.768.0g3975.t1.1ubiquitin-fold modifier 1JBrowse
3768at6073Duplicated1169.8639.0BRAKERIOWP00000006423.1glycogen JBrowse
3768at6073Duplicated1169.8639.0g3780.t1.1glycogen JBrowse
3768at6073Duplicated1145.2621.0BRAKERIOWP00000006422.1glycogen JBrowse
3768at6073Duplicated1145.2621.0g3780.t2.1glycogen JBrowse
3768at6073Duplicated1041.0590.0BRAKERIOWP00000006424.1glycogen JBrowse
3768at6073Duplicated1041.0590.0g3780.t3.1glycogen JBrowse
3797at6073Duplicated365.7307.0BRAKERIOWP00000005527.1mitochondrial thiamine pyrophosphate carrier-likeJBrowse
3797at6073Duplicated365.7307.0g20579.t1.1mitochondrial thiamine pyrophosphate carrier-likeJBrowse
3818at6073Duplicated614.2459.0BRAKERIOWP00000014959.1F-box/LRR-repeat protein 20JBrowse
3818at6073Duplicated614.2459.0g15376.t1.1F-box/LRR-repeat protein 20JBrowse
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