BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
3848at6073Duplicated791.0413.0BRAKERIOWP00000008180.15-aminolevulinate synthase, nonspecific, mitochondrial-likeJBrowse
3848at6073Duplicated791.0413.0g5677.t1.15-aminolevulinate synthase, nonspecific, mitochondrial-likeJBrowse
3848at6073Duplicated732.2413.0BRAKERIOWP00000011119.15-aminolevulinate synthase, nonspecific, mitochondrial-likeJBrowse
3848at6073Duplicated732.2413.0g1496.t1.15-aminolevulinate synthase, nonspecific, mitochondrial-likeJBrowse
3911at6073Duplicated867.1572.0BRAKERIOWP00000000066.1Gamma-tubulin complex component 4JBrowse
3911at6073Duplicated867.1572.0g18134.t1.1Gamma-tubulin complex component 4JBrowse
4064at6073Fragmented447.3339.0BRAKERIOWP00000005948.1T-box transcription factor TBX3-likeJBrowse
4079at6073Duplicated178.9219.0BRAKERIOWP00000010157.1sorting nexin-10B-likeJBrowse
4079at6073Duplicated178.9219.0g19581.t1.1sorting nexin-10B-likeJBrowse
4079at6073Duplicated167.7191.0BRAKERIOWP00000015376.1sorting nexin-10B-likeJBrowse
4079at6073Duplicated167.7191.0g15391.t1.1sorting nexin-10B-likeJBrowse
4090at6073Duplicated231.3216.0BRAKERIOWP00000013723.1noggin-likeJBrowse
4090at6073Duplicated231.3216.0g13992.t1.1noggin-likeJBrowse
4122at6073Duplicated350.8179.0BRAKERIOWP00000017635.1Trafficking protein particle complex subunit 3JBrowse
4122at6073Duplicated350.8179.0g20004.t1.1Trafficking protein particle complex subunit 3JBrowse
4148at6073Duplicated566.2484.0BRAKERIOWP00000013777.1sphingosine kinase 2-likeJBrowse
4148at6073Duplicated566.2484.0g2428.t1.1sphingosine kinase 2-likeJBrowse
4192at6073Duplicated619.4530.0BRAKERIOWP00000019784.1Prolyl 3-hydroxylase 2JBrowse
4192at6073Duplicated619.4530.0g48.t1.1Prolyl 3-hydroxylase 2JBrowse
4196at6073Duplicated971.1682.0BRAKERIOWP00000012479.1NHL repeat-containing protein 2JBrowse
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