BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
4196at6073Duplicated971.1682.0g12492.t1.1NHL repeat-containing protein 2JBrowse
4204at6073Duplicated564.8379.0BRAKERIOWP00000004585.1ethanolaminephosphotransferase 1JBrowse
4204at6073Duplicated564.8379.0g5561.t1.1ethanolaminephosphotransferase 1JBrowse
4317at6073Fragmented1495.0863.0BRAKERIOWP00000011797.1methionine synthaseJBrowse
4319at6073Duplicated578.5435.0BRAKERIOWP00000012692.1meiosis-specific with OB domain-containing proteinJBrowse
4319at6073Duplicated578.5435.0g12657.t1.1meiosis-specific with OB domain-containing proteinJBrowse
4355at6073Duplicated669.6389.0BRAKERIOWP00000016299.1actin-like protein 6BJBrowse
4355at6073Duplicated669.6389.0g16229.t1.1actin-like protein 6BJBrowse
4370at6073Duplicated282.6189.0BRAKERIOWP00000015645.1exosome complex component RRP46-likeJBrowse
4370at6073Duplicated282.6189.0g11641.t1.1exosome complex component RRP46-likeJBrowse
4400at6073Duplicated562.3379.0BRAKERIOWP00000009314.1COP9 signalosome complex subunit 4JBrowse
4400at6073Duplicated562.3379.0g4790.t1.1COP9 signalosome complex subunit 4JBrowse
4403at6073Duplicated1048.0539.0BRAKERIOWP00000002037.1electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrialJBrowse
4403at6073Duplicated1048.0539.0g15365.t1.1electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrialJBrowse
4413at6073Duplicated321.0269.0BRAKERIOWP00000012403.1ADP-ribose glycohydrolase ARH3-likeJBrowse
4413at6073Duplicated321.0269.0g17695.t1.1ADP-ribose glycohydrolase ARH3-likeJBrowse
4441at6073Duplicated738.5415.0BRAKERIOWP00000002928.1multifunctional protein ADE2-likeJBrowse
4441at6073Duplicated738.5415.0g10822.t1.1multifunctional protein ADE2-likeJBrowse
4489at6073Duplicated596.0352.0BRAKERIOWP00000004933.1Cytohesin-1JBrowse
4489at6073Duplicated596.0352.0g13962.t1.1Cytohesin-1JBrowse
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