BUSCO Gene Details in Acropora intermedia

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Acropora intermediaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 81.0% [S: 69.2%, D: 11.8%] F: 10.6%, M: 8.4%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,594 (81.0%)2,215 (69.2%)379 (11.8%)340 (10.6%)269 (8.4%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

BUSCO hits recorded for Acropora intermedia: 3,383 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
8095at6073Complete260.3139.0aint_s0598.g8.t1mediator of RNA polymerase II transcription subunit 22JBrowse
8257at6073Complete1600.2740.0aint_s0077.g53.t1Cullin-3JBrowse
8280at6073Complete327.4217.0aint_s0495.g5.t1uncharacterized protein LOC122947107JBrowse
8347at6073Complete1520.5905.0aint_s0046.g1.t1inositol polyphosphate 5-phosphatase OCRLJBrowse
8368at6073Duplicated1275.6688.0aint_s0266.g21.t1FHF complex subunit HOOK interacting protein 2A-likeJBrowse
8368at6073Duplicated1266.1688.0aint_s0266.g21.t2FHF complex subunit HOOK interacting protein 2A-likeJBrowse
8406at6073Fragmented327.4182.0aint_s0149.g24.t1palmitoyltransferase ZDHHC15B-likeJBrowse
8407at6073Complete782.9347.0aint_s0094.g19.t1Mitogen-activated kinase 1JBrowse
8414at6073Complete248.0158.0aint_s0011.g95.t1class E basic helix-loop-helix protein 22 isoform X1JBrowse
8465at6073Duplicated705.7343.0aint_s0068.g29.t1hepatocyte nuclear factor 4-gammaJBrowse
8465at6073Duplicated704.2341.0aint_s0068.g29.t2hepatocyte nuclear factor 4-gammaJBrowse
8477at6073Complete201.0135.0aint_s0489.g13.t1uncharacterized protein LOC116295621JBrowse
8488at6073Complete571.4343.0aint_s0061.g64.t1spermatogenesis-associated protein 17JBrowse
8515at6073Complete448.5247.0aint_s0023.g26.t1ras-related protein Rab-36JBrowse
8529at6073Complete742.7456.0aint_s0402.g13.t1ras association domain-containing protein 1JBrowse
8605at6073Fragmented1106.0617.0aint_s0099.g68.t1Thioredoxin domain-containing 12JBrowse
8658at6073Complete624.0450.0aint_s0317.g13.t1F-box only protein 47JBrowse
8674at6073Complete511.7282.0aint_s0307.g27.t1Solute carrier family 25 member 51JBrowse
8715at6073Complete266.4140.0aint_s0297.g33.t1AP-4 complex subunit sigma-1JBrowse
8718at6073Complete1519.7894.0aint_s0601.g3.t1Ubiquitin conjugation factor E4 BJBrowse
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