BUSCO Gene Details in Hydra viridissima

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Hydra viridissimaBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.9% [S: 74.3%, D: 3.6%] F: 10.5%, M: 11.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,495 (77.9%)2,381 (74.3%)114 (3.6%)337 (10.5%)371 (11.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Hydra viridissima: 5,881 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
379at6073Duplicated434.8273.0BRAKERKREP00000012136.1uridylate-specific endoribonuclease BJBrowse
379at6073Duplicated434.8273.0g4077.t1.1uridylate-specific endoribonuclease BJBrowse
429at6073Duplicated309.9168.0BRAKERKREP00000008212.139S ribosomal protein L13, mitochondrialJBrowse
429at6073Duplicated309.9168.0g3546.t1.139S ribosomal protein L13, mitochondrialJBrowse
533at6073Duplicated356.1258.0BRAKERKREP00000007554.1somatomedin-B and thrombospondin type-1 domain-containing proteinJBrowse
533at6073Duplicated356.1258.0g18358.t1.1somatomedin-B and thrombospondin type-1 domain-containing proteinJBrowse
540at6073Duplicated708.8336.0BRAKERKREP00000010170.1WD repeat domain phosphoinositide-interacting protein 3JBrowse
540at6073Duplicated708.8336.0g13960.t1.1WD repeat domain phosphoinositide-interacting protein 3JBrowse
548at6073Duplicated416.9267.0BRAKERKREP00000001521.1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase-likeJBrowse
548at6073Duplicated416.9267.0g23932.t1.1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase-likeJBrowse
598at6073Duplicated301.0201.0BRAKERKREP00000026547.1N-alpha-acetyltransferase 60JBrowse
598at6073Duplicated301.0201.0g11909.t1.1N-alpha-acetyltransferase 60JBrowse
614at6073Duplicated534.1393.0BRAKERKREP00000016290.1F-box only protein 42JBrowse
614at6073Duplicated534.1393.0g4353.t1.1F-box only protein 42JBrowse
635at6073Fragmented225.7137.0BRAKERKREP00000026576.1START domain-containing protein 10JBrowse
639at6073Duplicated251.4236.0BRAKERKREP00000001054.1uncharacterized protein LOC116305772JBrowse
639at6073Duplicated251.4236.0g3745.t1.1uncharacterized protein LOC116305772JBrowse
646at6073Duplicated193.6150.0BRAKERKREP00000011529.1uncharacterized protein LOC114976257 isoform X1JBrowse
646at6073Duplicated193.6150.0g9404.t1.1uncharacterized protein LOC114976257 isoform X1JBrowse
671at6073Duplicated321.8142.0BRAKERKREP00000009905.1Thioredoxin-like 4AJBrowse
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