BUSCO Gene Details in Nemopilema nomurai

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Nemopilema nomuraiBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 74.3% [S: 68.7%, D: 5.6%] F: 9.3%, M: 16.4%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,380 (74.3%)2,200 (68.7%)180 (5.6%)297 (9.3%)526 (16.4%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Nemopilema nomurai: 2,877 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
757at6073Fragmented178.8144BRAKERMNPP00000013856.12-aminoethanethiol dioxygenase-likeJBrowse
765at6073Complete230.0340BRAKERMNPP00000015377.1zinc finger Y-chromosomal 2-likeJBrowse
781at6073Complete461.8212BRAKERMNPP00000001011.1MOB kinase activator 1BJBrowse
788at6073Complete1046.8621BRAKERMNPP00000013543.1protein arginine N-methyltransferase 5JBrowse
810at6073Fragmented601.9354BRAKERMNPP00000013986.1membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinaseJBrowse
916at6073Complete648.0438BRAKERMNPP00000005056.1Alpha-(1,3)-fucosyltransferase 11JBrowse
932at6073Duplicated393.3239BRAKERMNPP00000012681.1tRNA (guanine-N(7)-)-methyltransferaseJBrowse
932at6073Duplicated392.7239BRAKERMNPP00000002239.1tRNA (guanine-N(7)-)-methyltransferaseJBrowse
932at6073Duplicated346.4209BRAKERMNPP00000002354.1tRNA (guanine-N(7)-)-methyltransferaseJBrowse
935at6073Complete246.9150BRAKERMNPP00000015334.1ORM1-like protein 1JBrowse
970at6073Complete1020.4574BRAKERMNPP00000002263.1alkyldihydroxyacetonephosphate synthase, peroxisomal-likeJBrowse
980at6073Complete195.9113BRAKERMNPP00000004475.1mediator of RNA polymerase II transcription subunit 31JBrowse
1001at6073Complete530.9305BRAKERMNPP00000003961.1pirin-like proteinJBrowse
1029at6073Duplicated905.6658BRAKERMNPP00000010209.1polyunsaturated fatty acid 5-lipoxygenase-likeJBrowse
1029at6073Duplicated875.1658BRAKERMNPP00000012670.1polyunsaturated fatty acid 5-lipoxygenase-likeJBrowse
1029at6073Duplicated854.0653BRAKERMNPP00000015205.1polyunsaturated fatty acid 5-lipoxygenase-likeJBrowse
1030at6073Complete638.0396BRAKERMNPP00000001327.1lysine-specific demethylase 8-likeJBrowse
1053at6073Complete484.8280BRAKERMNPP00000008543.1Endoplasmic reticulum-Golgi intermediate compartment protein 1JBrowse
1118at6073Complete276.0291BRAKERMNPP00000002890.1embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-likeJBrowse
1121at6073Complete799.6447BRAKERMNPP00000000958.1Integrin-linked kinaseJBrowse
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