BUSCO Gene Details

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
321at6073Duplicated308.8179.0BRAKERIOWP00000016513.1vacuolar protein-sorting-associated protein 25JBrowse
321at6073Duplicated308.8179.0g15654.t1.1vacuolar protein-sorting-associated protein 25JBrowse
369at6073Duplicated440.2212.0BRAKERIOWP00000001849.160S ribosomal protein L10-like proteinJBrowse
369at6073Duplicated440.2212.0g1438.t1.160S ribosomal protein L10-like proteinJBrowse
379at6073Duplicated726.6275.0BRAKERIOWP00000006210.1uridylate-specific endoribonuclease BJBrowse
379at6073Duplicated726.6275.0g2267.t1.1uridylate-specific endoribonuclease BJBrowse
429at6073Duplicated291.6168.0BRAKERIOWP00000007583.139S ribosomal protein L13, mitochondrialJBrowse
429at6073Duplicated291.6168.0g475.t1.139S ribosomal protein L13, mitochondrialJBrowse
460at6073Duplicated337.0229.0BRAKERIOWP00000007851.1protein STPG4-likeJBrowse
460at6073Duplicated337.0229.0g984.t1.1protein STPG4-likeJBrowse
524at6073Duplicated177.0117.0BRAKERIOWP00000007788.1Ubiquitin-like domainJBrowse
524at6073Duplicated177.0117.0g18097.t1.1Ubiquitin-like domainJBrowse
533at6073Fragmented608.175.0BRAKERIOWP00000014113.1somatomedin-B and thrombospondin type-1 domain-containing proteinJBrowse
540at6073Duplicated705.3339.0BRAKERIOWP00000001838.1WD repeat domain phosphoinositide-interacting protein 3JBrowse
540at6073Duplicated705.3339.0g1444.t1.1WD repeat domain phosphoinositide-interacting protein 3JBrowse
548at6073Duplicated390.2261.0BRAKERIOWP00000009610.1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase-likeJBrowse
548at6073Duplicated390.2261.0g20363.t1.1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase-likeJBrowse
598at6073Duplicated312.1188.0BRAKERIOWP00000001848.1N-alpha-acetyltransferase 60JBrowse
598at6073Duplicated312.1188.0g1449.t1.1N-alpha-acetyltransferase 60JBrowse
599at6073Duplicated162.1112.0BRAKERIOWP00000014812.1guanine nucleotide exchange factor MSS4JBrowse
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