BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
10181at6073Fragmented184.8144BRAKERIOWP00000008048.1uncharacterized protein LOC116286471JBrowse
10192at6073Complete734.8441BRAKERIOWP00000013339.1V-type proton ATPase subunit HJBrowse
10196at6073Complete293.0242BRAKERIOWP00000010381.1trimeric intracellular cation channel typeJBrowse
10202at6073Complete920.4476BRAKERIOWP00000004292.1Importin subunit alpha-3JBrowse
10213at6073Complete158.8159BRAKERIOWP00000014698.1CB1 cannabinoid receptor-interacting protein 1JBrowse
10231at6073Complete737.8544BRAKERIOWP00000013074.1alkylated DNA repair protein alkB homolog 8-likeJBrowse
10260at6073Fragmented365.4196BRAKERIOWP00000006885.1probable aminopeptidase NPEPL1JBrowse
10283at6073Duplicated1001.4608BRAKERIOWP00000019130.1solute carrier organic anion transporter family member 4A1-likeJBrowse
10283at6073Duplicated1001.4608BRAKERIOWP00000019132.1solute carrier organic anion transporter family member 4A1-likeJBrowse
10348at6073Complete229.1156BRAKERIOWP00000012203.1Pancreas transcription factor 1 subunit alphaJBrowse
10369at6073Complete371.6210BRAKERIOWP00000008649.1nucleoside diphosphate kinase homolog 5JBrowse
10403at6073Complete940.8686BRAKERIOWP00000020272.1Serine/threonine-protein kinase sik2JBrowse
10404at6073Complete4046.02334BRAKERIOWP00000007084.1CCR4-NOT transcription complex subunit 1JBrowse
10422at6073Complete355.8342BRAKERIOWP00000014639.1activating signal cointegrator 1 complex subunitJBrowse
10506at6073Fragmented364.5228BRAKERIOWP00000009490.1LIM/homeobox protein Lhx1-likeJBrowse
10512at6073Duplicated442.5256BRAKERIOWP00000007229.1plasmanylethanolamine desaturaseJBrowse
10512at6073Duplicated441.5256BRAKERIOWP00000007233.1plasmanylethanolamine desaturaseJBrowse
10571at6073Fragmented150.7217BRAKERIOWP00000002111.1suppressor APC domain-containing protein 2-likeJBrowse
10748at6073Fragmented356.3251BRAKERIOWP00000006011.1cytosolic arginine sensor for mTORC1 subunit 1-likeJBrowse
10802at6073Complete344.2202BRAKERIOWP00000012663.1inhibitor of growth protein 5-likeJBrowse
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