Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.
Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 73.5% [S: 71.4%, D: 2.1%] F: 9.2%, M: 17.3%
| Complete (C = S + D) | Single-copy (S) | Duplicated (D) | Fragmented (F) | Missing (M) |
|---|---|---|---|---|
| 2,355 (73.5%) | 2,287 (71.4%) | 68 (2.1%) | 294 (9.2%) | 554 (17.3%) |
A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.
Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.
| Busco ID | Status | Score | Length | Gene ID | Description | Visualization |
|---|---|---|---|---|---|---|
| 5460at6073 | Duplicated | 349.5 | 214.0 | BRAKERHOCP00005017401.1 | glutamine amidotransferase-like class 1 domain-containing 1 | JBrowse |
| 5460at6073 | Duplicated | 349.5 | 214.0 | g1004.t1.1 | glutamine amidotransferase-like class 1 domain-containing 1 | JBrowse |
| 5475at6073 | Duplicated | 216.9 | 184.0 | BRAKERHOCP00005017302.1 | ATP synthase subunit C lysine N-methyltransferase-like | JBrowse |
| 5475at6073 | Duplicated | 216.9 | 184.0 | g1601.t1.1 | ATP synthase subunit C lysine N-methyltransferase-like | JBrowse |
| 5506at6073 | Fragmented | 153.1 | 117.0 | BRAKERHOCP00005009726.1 | 28S ribosomal protein S24, mitochondrial | JBrowse |
| 5527at6073 | Duplicated | 213.5 | 151.0 | BRAKERHOCP00005014238.1 | protein SYS1 homolog | JBrowse |
| 5527at6073 | Duplicated | 213.5 | 151.0 | g17687.t1.1 | protein SYS1 homolog | JBrowse |
| 5616at6073 | Duplicated | 315.6 | 181.0 | BRAKERHOCP00005005085.1 | mitochondrial import inner membrane translocase subunit Tim23 | JBrowse |
| 5616at6073 | Duplicated | 315.6 | 181.0 | g12526.t1.1 | mitochondrial import inner membrane translocase subunit Tim23 | JBrowse |
| 5670at6073 | Duplicated | 286.1 | 226.0 | BRAKERHOCP00005002753.1 | MIT domain-containing protein 1 | JBrowse |
| 5670at6073 | Duplicated | 286.1 | 226.0 | g7628.t1.1 | MIT domain-containing protein 1 | JBrowse |
| 5708at6073 | Duplicated | 492.0 | 332.0 | BRAKERHOCP00005002342.1 | ATPase family AAA domain-containing 1 | JBrowse |
| 5708at6073 | Duplicated | 492.0 | 332.0 | g7660.t1.1 | ATPase family AAA domain-containing 1 | JBrowse |
| 5718at6073 | Duplicated | 1779.8 | 964.0 | BRAKERHOCP00005013472.1 | Valine--tRNA ligase | JBrowse |
| 5718at6073 | Duplicated | 1779.8 | 964.0 | g20174.t1.1 | Valine--tRNA ligase | JBrowse |
| 5762at6073 | Duplicated | 455.9 | 286.0 | BRAKERHOCP00005009497.1 | ribonuclease H2 subunit A | JBrowse |
| 5762at6073 | Duplicated | 455.9 | 286.0 | g15327.t1.1 | ribonuclease H2 subunit A | JBrowse |
| 5972at6073 | Fragmented | 113.1 | 184.0 | BRAKERHOCP00005008039.1 | GRB2-associated-binding protein 1-like | JBrowse |
| 6014at6073 | Duplicated | 495.8 | 366.0 | BRAKERHOCP00005010930.1 | uncharacterized protein LOC116304099 | JBrowse |
| 6014at6073 | Duplicated | 495.8 | 366.0 | g14838.t1.1 | uncharacterized protein LOC116304099 | JBrowse |