BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
11582at6073Complete268.3171BRAKERIOWP00000009830.1ER membrane protein complex subunit 4JBrowse
11629at6073Complete400.3207BRAKERIOWP00000006664.140S ribosomal proteinJBrowse
11744at6073Complete250.8171BRAKERIOWP00000011036.1protein ATP6V1FNB-likeJBrowse
11802at6073Complete845.9494BRAKERIOWP00000002555.1mitochondrial-processing peptidase subunit alphaJBrowse
11834at6073Complete358.7210BRAKERIOWP00000016217.1UPF0428 protein CXorf56JBrowse
11852at6073Complete182.6120BRAKERIOWP00000014104.128S ribosomal protein S6, mitochondrial-likeJBrowse
11858at6073Complete762.0338BRAKERIOWP00000003046.1Casein kinase II subunit alphaJBrowse
11940at6073Fragmented337.3233BRAKERIOWP00000000154.1solute carrier family 35 member E3-likeJBrowse
11943at6073Complete687.2542BRAKERIOWP00000001985.1TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5LJBrowse
12015at6073Duplicated593.6463BRAKERIOWP00000015803.1DNA-(apurinic or apyrimidinic site) endonuclease 2JBrowse
12015at6073Duplicated556.1445BRAKERIOWP00000015804.1DNA-(apurinic or apyrimidinic site) endonuclease 2JBrowse
12093at6073Fragmented746.6524BRAKERIOWP00000018835.1tyrosine-protein kinase HTK16JBrowse
12106at6073Fragmented359.0325BRAKERIOWP00000003249.1GATA-binding factor 2-likeJBrowse
12121at6073Complete265.1308BRAKERIOWP00000015230.1Ectonucleoside triphosphate diphosphohydrolase 5JBrowse
12142at6073Complete545.8281BRAKERIOWP00000006090.1Golgi phosphoprotein 3-likeJBrowse
12150at6073Fragmented380.6406BRAKERIOWP00000010575.1protein smoothened-likeJBrowse
12151at6073Complete927.4934BRAKERIOWP00000010736.1F-box/WD repeat-containing protein 10JBrowse
12222at6073Fragmented270.0186BRAKERIOWP00000006091.1MORN repeat-containing protein 1JBrowse
12286at6073Duplicated937.0977BRAKERIOWP00000001260.1integrinJBrowse
12286at6073Duplicated865.0910BRAKERIOWP00000000200.1integrinJBrowse
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