BUSCO Gene Details in Acropora palmata

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Acropora palmataBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 99.7% [S: 71.5%, D: 28.2%] F: 0.1%, M: 0.2%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
3,194 (99.7%)2,290 (71.5%)904 (28.2%)3 (0.1%)6 (0.2%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

BUSCO hits recorded for Acropora palmata: 4,748 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77002at6073Complete900.6523.0XP_074610711.1Deformed epidermal autoregulatory factor 1JBrowse
77005at6073Complete518.8345.0XP_074607374.1thioredoxin domain-containing protein 5JBrowse
77006at6073Complete528.5299.0XP_074626830.1UbiA prenyltransferase domain-containing protein 1JBrowse
77014at6073Complete430.0279.0XP_074629198.1leucine-rich repeat-containing protein 40-likeJBrowse
77026at6073Complete1300.2806.0XP_074617982.1radial spoke head 10 homolog B-likeJBrowse
77034at6073Complete1925.11696.0XP_074606104.1putative leucine-rich repeat-containing protein DDB_G0290503JBrowse
77036at6073Complete465.9292.0XP_074613991.1Vacuolar protein sorting-associated protein 72JBrowse
77038at6073Duplicated1985.61300.0XP_074619039.1enhancer of mRNA-decapping protein 4JBrowse
77038at6073Duplicated1952.01279.0XP_074619040.1enhancer of mRNA-decapping protein 4JBrowse
77045at6073Complete387.2273.0XP_074635945.1E3 ubiquitin-protein ligase rnf146JBrowse
77049at6073Complete759.2500.0XP_074619328.1stromal interaction molecule 1-likeJBrowse
77067at6073Duplicated644.1455.0XP_074619876.1protein Spindly-likeJBrowse
77067at6073Duplicated641.8453.0XP_074619547.1protein Spindly-likeJBrowse
77067at6073Duplicated590.6408.0XP_074619161.1protein Spindly-likeJBrowse
77068at6073Complete1949.51218.0XP_074637668.1kinesin-like protein 1 isoform X1JBrowse
77076at6073Duplicated1565.3995.0XP_074615783.1leucine-rich repeat and coiled-coil domain-containing protein 1JBrowse
77076at6073Duplicated1564.3995.0XP_074615782.1leucine-rich repeat and coiled-coil domain-containing protein 1JBrowse
77076at6073Duplicated1562.8995.0XP_074615781.1leucine-rich repeat and coiled-coil domain-containing protein 1JBrowse
77076at6073Duplicated1562.0995.0XP_074615780.1leucine-rich repeat and coiled-coil domain-containing protein 1JBrowse
77078at6073Complete759.5430.0XP_074637888.1coiled-coil domain-containing protein 96JBrowse
Go to page: of 238 pages
TOP