BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
12343at6073Complete525.7367BRAKERIOWP00000001401.1UPF0415 protein C7orf25JBrowse
12353at6073Complete1086.4721BRAKERIOWP00000014436.1probable E3 ubiquitin-protein ligase HECTD2JBrowse
12355at6073Complete1069.7333BRAKERIOWP00000002581.1uncharacterized protein LOC131786110 isoform X1JBrowse
12360at6073Complete980.4569BRAKERIOWP00000006675.1Phosphoglucomutase-2JBrowse
12410at6073Complete816.1503BRAKERIOWP00000000052.1N6-adenosine-methyltransferase catalytic subunit-likeJBrowse
12452at6073Complete224.0237BRAKERIOWP00000001419.1WW domain-binding protein 4JBrowse
12477at6073Complete394.0342BRAKERIOWP00000006129.1adenosine deaminase-like protein isoform X1JBrowse
12498at6073Complete762.6408BRAKERIOWP00000011299.1Zinc finger, RING-typeJBrowse
12527at6073Complete1172.3630BRAKERIOWP00000000168.1acetyl-coenzyme A synthetase 2-like, mitochondrialJBrowse
12540at6073Complete1169.3770BRAKERIOWP00000014587.1endothelin-converting enzyme 1JBrowse
12544at6073Duplicated419.6258BRAKERIOWP00000004177.1Putative deoxyribonuclease tatdn3JBrowse
12544at6073Duplicated417.9257BRAKERIOWP00000004171.1Putative deoxyribonuclease tatdn3JBrowse
12573at6073Complete147.696BRAKERIOWP00000012044.1signal peptidase complex subunit 1JBrowse
12596at6073Complete805.3410BRAKERIOWP00000013876.1elongation factor TuJBrowse
12608at6073Fragmented205.5132BRAKERIOWP00000011558.1homeoboxJBrowse
12680at6073Complete819.9393BRAKERIOWP00000008058.1ATP-dependent RNA helicase eIF4AJBrowse
12684at6073Fragmented430.1268BRAKERIOWP00000019058.1cysteine and histidine-rich protein 1-AJBrowse
12784at6073Complete467.3400BRAKERIOWP00000003228.1T-complex protein 11JBrowse
12845at6073Complete434.5300BRAKERIOWP00000011420.1protein YIPF1-likeJBrowse
12900at6073Complete296.4388BRAKERIOWP00000015454.1uncharacterized protein LOC122946992JBrowse
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