BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
12912at6073Complete1862.9942BRAKERIOWP00000010248.1coatomer subunit betaJBrowse
12919at6073Complete410.1270BRAKERIOWP00000013684.1protein-S-isoprenylcysteine O-methyltransferase-likeJBrowse
12980at6073Complete806.2746BRAKERIOWP00000014432.1uncharacterized protein LOC114955734 isoform X1JBrowse
12994at6073Complete535.3310BRAKERIOWP00000006732.1ribose-phosphate pyrophosphokinase 4JBrowse
13010at6073Complete144.9215BRAKERIOWP00000004213.1transcription cofactor vestigial-like protein 4JBrowse
13022at6073Complete1084.3648BRAKERIOWP00000015866.1DNA (cytosine-5)-methyltransferase 3AJBrowse
13033at6073Complete2045.51110BRAKERIOWP00000002692.1phospholipid-transporting ATPase IA-likeJBrowse
13037at6073Complete489.7303BRAKERIOWP00000004566.14-hydroxy-2-oxoglutarate aldolase, mitochondrial-likeJBrowse
13042at6073Complete947.2511BRAKERIOWP00000005107.1E3 ubiquitin-protein ligase arih1-likeJBrowse
13067at6073Complete433.6288BRAKERIOWP00000009207.1thioredoxin-like protein 1JBrowse
13093at6073Complete157.5120BRAKERIOWP00000002562.1acyl carrier protein-likeJBrowse
13158at6073Complete639.4317BRAKERIOWP00000004999.1Meiotic recombination protein dmc1JBrowse
13160at6073Complete1054.9708BRAKERIOWP00000012206.1Tuftelin-interacting 11JBrowse
13196at6073Complete312.6219BRAKERIOWP00000010402.150S ribosomal protein L17JBrowse
13237at6073Complete325.4179BRAKERIOWP00000000772.1pre-mRNA-splicing factor SPF27-likeJBrowse
13295at6073Fragmented292.4160BRAKERIOWP00000000996.1zinc finger protein 367JBrowse
13296at6073Complete498.4299BRAKERIOWP00000016587.1Serine/threonine-protein phosphatase 2A activatorJBrowse
13314at6073Fragmented280.7185BRAKERIOWP00000006326.1elongation of very long chain fatty acids protein 4-likeJBrowse
13403at6073Complete881.8656BRAKERIOWP00000014789.1disintegrin and metalloproteinase domain-containing protein 10JBrowse
13406at6073Complete189.9118BRAKERIOWP00000014280.1Zinc finger, RING-typeJBrowse
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