BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
13980at6073Complete490.6368BRAKERIOWP00000004879.1lysine-specific demethylase 8-likeJBrowse
13982at6073Complete473.5271BRAKERIOWP00000005444.1autophagy protein 5-likeJBrowse
14048at6073Complete669.7621BRAKERIOWP00000011786.1tyrosine-protein kinase RYK-likeJBrowse
14064at6073Duplicated412.4345BRAKERIOWP00000005897.1prostaglandin reductase 2JBrowse
14064at6073Duplicated444.4344BRAKERIOWP00000005909.1prostaglandin reductase 2JBrowse
14069at6073Complete697.3648BRAKERIOWP00000019146.1Integrator complex subunit 10JBrowse
14083at6073Complete407.5285BRAKERIOWP00000018388.1ELMO domain-containing protein 2JBrowse
14136at6073Complete378.9404BRAKERIOWP00000003237.1golgin-45-likeJBrowse
14176at6073Complete353.2246BRAKERIOWP00000005896.1Replication protein A 32 kDa subunitJBrowse
14205at6073Complete273.1174BRAKERIOWP00000001971.139S ribosomal protein L22, mitochondrial-likeJBrowse
14214at6073Complete615.8402BRAKERIOWP00000005230.1SynaptotagminJBrowse
14256at6073Complete458.5332BRAKERIOWP00000017162.1TAR DNA-binding protein 43JBrowse
14280at6073Complete308.7166BRAKERIOWP00000015813.1malignant T-cell-amplified sequence 1JBrowse
14288at6073Complete538.1494BRAKERIOWP00000002346.1nucleolar complex protein 4 homologJBrowse
14308at6073Complete339.1193BRAKERIOWP00000011245.1thymocyte nuclear protein 1JBrowse
14320at6073Complete424.9452BRAKERIOWP00000013779.1Usher syndrome type-1GJBrowse
14352at6073Complete610.4484BRAKERIOWP00000010870.1uncharacterized protein LOC116307487JBrowse
14388at6073Complete453.8532BRAKERIOWP00000007939.1protein zwilch homologJBrowse
14433at6073Complete583.9418BRAKERIOWP00000013452.1vacuolar protein sorting-associated protein 4B-likeJBrowse
14442at6073Complete383.7354BRAKERIOWP00000015256.1evolutionarily conserved signaling intermediate in Toll pathway, mitochondrialJBrowse
Go to page: of 148 pages
TOP