BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
76873at6073Duplicated1178.31098.0g9025.t1.1Zinc finger MIZ domain-containing protein 1JBrowse
76877at6073Duplicated555.1461.0BRAKERIOWP00000003681.1ankyrin repeat and LEM domain-containing protein 1JBrowse
76877at6073Duplicated555.1461.0g20699.t1.1ankyrin repeat and LEM domain-containing protein 1JBrowse
76878at6073Duplicated472.6325.0BRAKERIOWP00000015042.1signal peptide peptidase-like 3JBrowse
76878at6073Duplicated472.6325.0g12419.t1.1signal peptide peptidase-like 3JBrowse
76879at6073Duplicated959.7736.0BRAKERIOWP00000009884.1leucine-rich repeat-containing G-protein coupled receptor 5 isoform X1JBrowse
76879at6073Duplicated959.7736.0g7688.t1.1leucine-rich repeat-containing G-protein coupled receptor 5 isoform X1JBrowse
76889at6073Duplicated788.1871.0BRAKERIOWP00000003647.1testis-expressed protein 2JBrowse
76889at6073Duplicated788.1871.0g14523.t1.1testis-expressed protein 2JBrowse
76894at6073Duplicated698.2617.0BRAKERIOWP00000013224.1serine/threonine-protein kinase unc-51JBrowse
76894at6073Duplicated698.2617.0g20006.t1.1serine/threonine-protein kinase unc-51JBrowse
76901at6073Duplicated491.3490.0BRAKERIOWP00000001994.1uncharacterized protein KIAA2013 homologJBrowse
76901at6073Duplicated491.3490.0g19931.t1.1uncharacterized protein KIAA2013 homologJBrowse
76905at6073Duplicated344.1280.0BRAKERIOWP00000011746.1zinc finger protein GLI2-likeJBrowse
76905at6073Duplicated344.1280.0g12728.t1.1zinc finger protein GLI2-likeJBrowse
76914at6073Duplicated366.1395.0BRAKERIOWP00000012348.1E3 ubiquitin-protein ligase TRAIPJBrowse
76914at6073Duplicated366.1395.0g8565.t1.1E3 ubiquitin-protein ligase TRAIPJBrowse
76915at6073Duplicated882.1737.0BRAKERIOWP00000007222.1WD repeat-containing protein 47JBrowse
76915at6073Duplicated882.1737.0g18532.t1.1WD repeat-containing protein 47JBrowse
76922at6073Duplicated409.1336.0BRAKERIOWP00000001048.1UBX domain-containing protein 1JBrowse
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