BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
76922at6073Duplicated409.1336.0g19473.t1.1UBX domain-containing protein 1JBrowse
76925at6073Duplicated1856.21494.0BRAKERIOWP00000001383.1uncharacterized protein LOC116302959JBrowse
76925at6073Duplicated1856.21494.0g4357.t1.1uncharacterized protein LOC116302959JBrowse
76928at6073Duplicated273.3194.0BRAKERIOWP00000006710.1E3 ubiquitin-protein ligase march2JBrowse
76928at6073Duplicated273.3194.0g6429.t1.1E3 ubiquitin-protein ligase march2JBrowse
76929at6073Duplicated193.7165.0BRAKERIOWP00000005808.1non-histone chromosomal protein 6JBrowse
76929at6073Duplicated193.7165.0g16915.t1.1non-histone chromosomal protein 6JBrowse
76930at6073Duplicated604.8598.0BRAKERIOWP00000006994.1DNA replication factor Cdt1JBrowse
76930at6073Duplicated604.8598.0g15027.t1.1DNA replication factor Cdt1JBrowse
76935at6073Duplicated179.0169.0BRAKERIOWP00000004541.1uncharacterized protein LOC110236280 isoform X1JBrowse
76935at6073Duplicated179.0169.0g1228.t1.1uncharacterized protein LOC110236280 isoform X1JBrowse
76938at6073Fragmented428.1361.0BRAKERIOWP00000017012.1ELMO domain-containing protein 3JBrowse
76943at6073Duplicated204.8158.0BRAKERIOWP00000012937.1Zinc finger MYND domain-containing protein 11JBrowse
76943at6073Duplicated204.8158.0g16780.t1.1Zinc finger MYND domain-containing protein 11JBrowse
76948at6073Duplicated290.7351.0BRAKERIOWP00000019950.1coiled-coil domain-containing protein 92JBrowse
76948at6073Duplicated290.7351.0g10269.t1.1coiled-coil domain-containing protein 92JBrowse
76966at6073Fragmented224.0176.0BRAKERIOWP00000009054.1E2F-associated phosphoprotein-likeJBrowse
76990at6073Duplicated616.2509.0BRAKERIOWP00000008196.1U3 small nucleolar RNA-associated protein 14 AJBrowse
76990at6073Duplicated616.2509.0g7995.t1.1U3 small nucleolar RNA-associated protein 14 AJBrowse
76992at6073Duplicated537.5437.08067_t.1glycerate kinase-likeJBrowse
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