BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77092at6073Duplicated434.2400.0BRAKERIOWP00000012714.1nucleotide exchange factor SIL1JBrowse
77092at6073Duplicated434.2400.0g94.t1.1nucleotide exchange factor SIL1JBrowse
77095at6073Fragmented460.4307.0BRAKERIOWP00000011684.1DNA cross-link repair 1AJBrowse
77101at6073Duplicated569.2570.0BRAKERIOWP00000013794.1eukaryotic translation initiation factor 2-alpha kinase 1JBrowse
77101at6073Duplicated569.2570.0g18204.t2.1eukaryotic translation initiation factor 2-alpha kinase 1JBrowse
77101at6073Duplicated582.4569.0BRAKERIOWP00000013795.1eukaryotic translation initiation factor 2-alpha kinase 1JBrowse
77101at6073Duplicated582.4569.0g18204.t1.1eukaryotic translation initiation factor 2-alpha kinase 1JBrowse
77103at6073Duplicated772.9707.0BRAKERIOWP00000001304.1ribonucleases P/MRP protein subunit POP1-likeJBrowse
77103at6073Duplicated772.9707.0g10036.t1.1ribonucleases P/MRP protein subunit POP1-likeJBrowse
77115at6073Duplicated537.4409.0BRAKERIOWP00000008165.1DDB1- and CUL4-associated factor 5JBrowse
77115at6073Duplicated537.4409.0g19410.t1.1DDB1- and CUL4-associated factor 5JBrowse
77134at6073Duplicated153.295.0BRAKERIOWP00000003397.1nucleolar and coiled-body phosphoprotein 1JBrowse
77134at6073Duplicated153.295.0g14747.t1.1nucleolar and coiled-body phosphoprotein 1JBrowse
77148at6073Duplicated568.9555.0BRAKERIOWP00000013862.1kinetochore protein NDC80 homologJBrowse
77148at6073Duplicated568.9555.0g18650.t1.1kinetochore protein NDC80 homologJBrowse
77163at6073Duplicated478.8442.0BRAKERIOWP00000001135.1coiled-coil domain-containing protein 138JBrowse
77163at6073Duplicated478.8442.0g16706.t1.1coiled-coil domain-containing protein 138JBrowse
77166at6073Duplicated456.3394.0BRAKERIOWP00000016067.1forkhead box protein J3-likeJBrowse
77166at6073Duplicated456.3394.0g19000.t1.1forkhead box protein J3-likeJBrowse
77171at6073Duplicated253.6271.0BRAKERIOWP00000000569.1transcriptional regulator Myc-1-likeJBrowse
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