BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77171at6073Duplicated253.6271.0g3023.t1.1transcriptional regulator Myc-1-likeJBrowse
77172at6073Duplicated333.2309.0BRAKERIOWP00000019468.1malonyl-CoA-acyl carrier protein transacylase, mitochondrialJBrowse
77172at6073Duplicated333.2309.0g2285.t1.1malonyl-CoA-acyl carrier protein transacylase, mitochondrialJBrowse
77177at6073Duplicated333.2321.0BRAKERIOWP00000003783.1HAUS augmin-like complex subunit 4JBrowse
77177at6073Duplicated333.2321.0g815.t1.1HAUS augmin-like complex subunit 4JBrowse
77182at6073Duplicated290.8267.0BRAKERIOWP00000009582.1transcription initiation factor IIA subunit 1JBrowse
77182at6073Duplicated290.8267.0g11182.t1.1transcription initiation factor IIA subunit 1JBrowse
77184at6073Duplicated752.1599.0BRAKERIOWP00000013239.1transcriptional protein SWT1-likeJBrowse
77184at6073Duplicated752.1599.0g7146.t1.1transcriptional protein SWT1-likeJBrowse
77199at6073Duplicated309.1230.0BRAKERIOWP00000002515.1reticulon-1-AJBrowse
77199at6073Duplicated309.1230.0g14885.t1.1reticulon-1-AJBrowse
77200at6073Fragmented254.7395.0BRAKERIOWP00000001287.1scaffold protein salvador-likeJBrowse
77208at6073Fragmented320.4116.0BRAKERIOWP00000005263.1ribonuclease IIIJBrowse
77217at6073Duplicated343.6250.0BRAKERIOWP00000018061.1ribosomal L1 domain-containing protein 1JBrowse
77217at6073Duplicated343.6250.0g15733.t1.1ribosomal L1 domain-containing protein 1JBrowse
77220at6073Duplicated280.0272.0BRAKERIOWP00000013062.1uncharacterized protein LOC114517244JBrowse
77220at6073Duplicated280.0272.0g5260.t1.1uncharacterized protein LOC114517244JBrowse
77225at6073Duplicated2656.42104.0BRAKERIOWP00000001451.1abnormal spindle-like microcephaly-associated proteinJBrowse
77225at6073Duplicated2656.42104.0g15573.t1.1abnormal spindle-like microcephaly-associated proteinJBrowse
77227at6073Duplicated364.3398.0BRAKERIOWP00000011777.1ETS translocation variant 1JBrowse
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