BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77294at6073Duplicated813.4716.0g18739.t2.1Serine/threonine-protein phosphatase 4 regulatory subunit 4JBrowse
77312at6073Duplicated645.3474.0BRAKERIOWP00000009220.1probable ATP-dependent RNA helicase DDX20JBrowse
77312at6073Duplicated645.3474.0g18803.t1.1probable ATP-dependent RNA helicase DDX20JBrowse
77313at6073Duplicated516.8764.0BRAKERIOWP00000015622.1axin-1JBrowse
77313at6073Duplicated516.8764.0g2456.t1.1axin-1JBrowse
77318at6073Fragmented240.3216.0BRAKERIOWP00000004600.1FACT complex subunit SSRP1-likeJBrowse
77333at6073Duplicated608.0691.0BRAKERIOWP00000011609.1anaphase-promoting complex subunit 5JBrowse
77333at6073Duplicated608.0691.0g9477.t1.1anaphase-promoting complex subunit 5JBrowse
77334at6073Duplicated232.4208.0BRAKERIOWP00000009170.1disks large-associated protein 1-likeJBrowse
77334at6073Duplicated232.4208.0g269.t1.1disks large-associated protein 1-likeJBrowse
77344at6073Duplicated244.9242.0BRAKERIOWP00000011860.1thioredoxin domain-containing protein 15JBrowse
77344at6073Duplicated244.9242.0g1877.t1.1thioredoxin domain-containing protein 15JBrowse
77345at6073Duplicated334.8454.0BRAKERIOWP00000005238.1inositol-pentakisphosphate 2-kinaseJBrowse
77345at6073Duplicated334.8454.0g579.t1.1inositol-pentakisphosphate 2-kinaseJBrowse
77346at6073Duplicated262.3281.0BRAKERIOWP00000006900.1protein phosphatase 1 regulatory subunit 12A-likeJBrowse
77346at6073Duplicated262.3281.0g12749.t1.1protein phosphatase 1 regulatory subunit 12A-likeJBrowse
77348at6073Duplicated262.4243.0BRAKERIOWP00000014636.1sodium/potassium-transporting ATPase subunit beta-1-likeJBrowse
77348at6073Duplicated262.4243.0g1367.t1.1sodium/potassium-transporting ATPase subunit beta-1-likeJBrowse
77354at6073Duplicated136.7150.0BRAKERIOWP00000014626.1zinc finger HIT domain-containing protein 3JBrowse
77354at6073Duplicated136.7150.0g15721.t1.1zinc finger HIT domain-containing protein 3JBrowse
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