BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77381at6073Fragmented395.3257.0BRAKERIOWP00000009839.1coiled-coil domain-containing protein 186JBrowse
77382at6073Duplicated198.6198.0BRAKERIOWP00000014654.1eukaryotic translation initiation factor 3 subunit JJBrowse
77382at6073Duplicated198.6198.0g6024.t1.1eukaryotic translation initiation factor 3 subunit JJBrowse
77386at6073Fragmented110.8201.0BRAKERIOWP00000015296.1G kinase-anchoring protein 1JBrowse
77389at6073Duplicated363.4530.0BRAKERIOWP00000016205.1Peroxisome proliferator-activated receptor gamma coactivator-related 1JBrowse
77389at6073Duplicated363.4530.0g10955.t1.1Peroxisome proliferator-activated receptor gamma coactivator-related 1JBrowse
77391at6073Duplicated526.5488.0BRAKERIOWP00000003522.1Cleavage stimulation factor subunit 2JBrowse
77391at6073Duplicated526.5488.0g11990.t1.1Cleavage stimulation factor subunit 2JBrowse
77400at6073Duplicated394.1317.0BRAKERIOWP00000012826.1forkhead box protein P1-likeJBrowse
77400at6073Duplicated394.1317.0g15225.t1.1forkhead box protein P1-likeJBrowse
77410at6073Duplicated865.7973.0BRAKERIOWP00000004891.1nuclear exosome regulator NRDE2JBrowse
77410at6073Duplicated865.7973.0g2864.t1.1nuclear exosome regulator NRDE2JBrowse
77414at6073Duplicated457.9412.0BRAKERIOWP00000002285.1Myelin expression factor 2JBrowse
77414at6073Duplicated457.9412.0g11513.t1.1Myelin expression factor 2JBrowse
77415at6073Duplicated237.8252.0BRAKERIOWP00000015374.1ELL-associated factor 1JBrowse
77415at6073Duplicated237.8252.0g15392.t1.1ELL-associated factor 1JBrowse
77417at6073Duplicated352.7460.0BRAKERIOWP00000003560.1BICD family-like cargo adapter 1JBrowse
77417at6073Duplicated352.7460.0g6935.t1.1BICD family-like cargo adapter 1JBrowse
77426at6073Duplicated710.6620.0BRAKERIOWP00000019785.1enhancer of polycomb homolog 1JBrowse
77426at6073Duplicated710.6620.0g5096.t1.1enhancer of polycomb homolog 1JBrowse
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