BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77435at6073Duplicated337.4333.0BRAKERIOWP00000005947.1nuclear cap-binding protein subunit 3JBrowse
77435at6073Duplicated337.4333.0g13522.t1.1nuclear cap-binding protein subunit 3JBrowse
77439at6073Duplicated603.3731.0BRAKERIOWP00000004310.1coiled-coil domain-containing protein 178JBrowse
77439at6073Duplicated603.3731.0g10155.t1.1coiled-coil domain-containing protein 178JBrowse
77448at6073Duplicated272.8251.0BRAKERIOWP00000014565.1Cleavage inducing molecular chaperoneJBrowse
77448at6073Duplicated272.8251.0g8922.t1.1Cleavage inducing molecular chaperoneJBrowse
77456at6073Duplicated800.1693.0BRAKERIOWP00000016279.1MYCBP-associated proteinJBrowse
77456at6073Duplicated800.1693.0g53.t1.1MYCBP-associated proteinJBrowse
77456at6073Duplicated767.7693.0BRAKERIOWP00000016280.1MYCBP-associated proteinJBrowse
77456at6073Duplicated767.7693.0g53.t2.1MYCBP-associated proteinJBrowse
77470at6073Fragmented255.2301.0BRAKERIOWP00000000656.1cyclic AMP-dependent transcription factor ATF-2JBrowse
77476at6073Duplicated411.1551.0BRAKERIOWP00000019862.1uncharacterized protein LOC116293469JBrowse
77476at6073Duplicated411.1551.0g13924.t1.1uncharacterized protein LOC116293469JBrowse
77495at6073Duplicated706.0506.0BRAKERIOWP00000001834.1cilia- and flagella-associated protein 53JBrowse
77495at6073Duplicated706.0506.0g16203.t1.1cilia- and flagella-associated protein 53JBrowse
77496at6073Duplicated843.4847.0BRAKERIOWP00000005377.1caskin-2JBrowse
77496at6073Duplicated843.4847.0g1246.t1.1caskin-2JBrowse
77499at6073Duplicated546.9450.0BRAKERIOWP00000018746.1AN1-type zinc finger protein 4JBrowse
77499at6073Duplicated546.9450.0g13025.t1.1AN1-type zinc finger protein 4JBrowse
77502at6073Duplicated446.2319.0BRAKERIOWP00000001810.1Peptidyl-prolyl cis-trans isomeraseJBrowse
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