BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 2,952 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
14896at6073Complete221.4221BRAKERIOWP00000005007.1lysosomal-associated transmembrane 4A-likeJBrowse
14913at6073Complete350.4212BRAKERIOWP00000000370.1protein C9orf135JBrowse
14925at6073Complete500.5258BRAKERIOWP00000010415.160S ribosomal protein L7a-likeJBrowse
14968at6073Complete420.4210BRAKERIOWP00000014705.1B9 domain-containing 1JBrowse
14987at6073Fragmented264.2191BRAKERIOWP00000008804.1insulinoma-associated protein 1a-likeJBrowse
15013at6073Complete359.8291BRAKERIOWP00000006738.1Cyclin-like domainJBrowse
15026at6073Complete607.2378BRAKERIOWP00000010023.1DUF21 domain-containing protein At4g33700-likeJBrowse
15044at6073Complete606.5352BRAKERIOWP00000001938.1Isocitrate dehydrogenaseJBrowse
15093at6073Complete313.0315BRAKERIOWP00000017216.1rho GTPase-activating syd-1-likeJBrowse
15136at6073Complete879.1513BRAKERIOWP00000000338.1U4/U6 small nuclear ribonucleoprotein Prp4-likeJBrowse
15162at6073Complete173.7101BRAKERIOWP00000011886.1eukaryotic translation initiation factor 1JBrowse
15222at6073Complete650.9442BRAKERIOWP00000007066.1GTPase HflX, N-terminalJBrowse
15248at6073Complete355.1220BRAKERIOWP00000015447.1vesicle-associated membrane protein 7JBrowse
15312at6073Complete208.1130BRAKERIOWP00000008301.1Mitochondrial intermembrane space import and assembly protein 40JBrowse
15346at6073Fragmented193.4178BRAKERIOWP00000001815.1protein C1orf43 homologJBrowse
15348at6073Fragmented158.2124BRAKERIOWP00000012097.1YY1-associated factor 2JBrowse
15359at6073Complete298.1215BRAKERIOWP00000001273.1EKC/KEOPS complex subunit TP53RKJBrowse
15362at6073Complete1155.3844BRAKERIOWP00000002601.1diacylglycerol kinase theta-likeJBrowse
15377at6073Complete745.9555BRAKERIOWP00000005476.1E3 ubiquitin-protein ligase RNF139-likeJBrowse
15413at6073Complete847.8694BRAKERIOWP00000013476.1coiled-coil domain-containing protein 81JBrowse
Go to page: of 148 pages
TOP