BUSCO Gene Details in Turritopsis rubra

Detailed Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis results for the selected species.

Genome completeness (BUSCO) Turritopsis rubraBelow quality threshold

Lineage cnidaria_odb12 · 3,203 BUSCOs · C: 77.6% [S: 74.9%, D: 2.7%] F: 11.7%, M: 10.6%

Single-copy complete (S)Duplicated (D)Fragmented (F)Missing (M)
Complete (C = S + D)Single-copy (S)Duplicated (D)Fragmented (F)Missing (M)
2,487 (77.6%)2,400 (74.9%)87 (2.7%)376 (11.7%)340 (10.6%)

A genome is counted as high-quality when C ≥ 90 %, D ≤ 10 % and F ≤ 5 %. Completeness is measured against the 3,203 BUSCOs of the cnidaria_odb12 lineage, not against the number of records held for the species.

Re-run on 2026-09-18 — these figures are comparable with the other species. In the original run, the protein set searched contained every protein twice — the same gene models are deposited under two naming schemes at once, a legacy one (IDs of the form g12345.t1) and a BRAKER one. Each BUSCO was therefore matched once under each name, at identical alignment score and length, and scored Duplicated, which is the signature of one sequence being counted twice rather than of a real gene duplication. BUSCO was re-run for this species on a de-duplicated set holding one sequence per gene locus, and the figures above come from that run. The original near-zero single-copy fraction was an artefact of the redundancy in the searched set, not a property of the assembly.

BUSCO hits recorded for Turritopsis rubra: 5,658 (one row per gene hit, not per BUSCO)
Show: genes per page
Busco ID Status Score Length Gene ID Description Visualization
77571at6073Duplicated627.3753.0g6696.t1.1ELKS/Rab6-interacting/CAST family member 1JBrowse
77584at6073Duplicated822.2772.0BRAKERIOWP00000000373.1prominin-1-AJBrowse
77584at6073Duplicated822.2772.0g8857.t1.1prominin-1-AJBrowse
77590at6073Duplicated405.2455.0BRAKERIOWP00000016226.1BSD domain-containing protein 1JBrowse
77590at6073Duplicated405.2455.0g1666.t1.1BSD domain-containing protein 1JBrowse
77591at6073Fragmented271.7296.0BRAKERIOWP00000005463.1abl interactor 1-likeJBrowse
77596at6073Fragmented279.1272.0BRAKERIOWP00000002992.1PIN2/TERF1-interacting telomerase inhibitor 1JBrowse
77611at6073Fragmented167.9139.0BRAKERIOWP00000016992.1protein FAM199X-likeJBrowse
77614at6073Duplicated215.7226.0BRAKERIOWP00000000409.1spermatogenesis-associated protein 7JBrowse
77614at6073Duplicated215.7226.0g20863.t1.1spermatogenesis-associated protein 7JBrowse
77617at6073Fragmented775.3936.0BRAKERIOWP00000015390.1Methylcytosine dioxygenaseJBrowse
77628at6073Duplicated238.3230.0BRAKERIOWP00000002253.1osteopetrosis-associated transmembrane protein 1JBrowse
77628at6073Duplicated238.3230.0g9501.t1.1osteopetrosis-associated transmembrane protein 1JBrowse
77638at6073Duplicated338.5404.0BRAKERIOWP00000019286.1SUMO-specific isopeptidase USPL1-likeJBrowse
77638at6073Duplicated338.5404.0g8723.t1.1SUMO-specific isopeptidase USPL1-likeJBrowse
77639at6073Fragmented228.6130.0BRAKERIOWP00000002499.1MICOS complex subunit MIC60JBrowse
77646at6073Fragmented295.1701.0BRAKERIOWP00000003089.1centlein-likeJBrowse
77652at6073Duplicated404.7389.0BRAKERIOWP00000004142.1ribosome biogenesis protein NOP53-likeJBrowse
77652at6073Duplicated404.7389.0g20133.t1.1ribosome biogenesis protein NOP53-likeJBrowse
77659at6073Duplicated594.9597.0BRAKERIOWP00000010944.1GRIP and coiled-coil domain-containing protein 1JBrowse
Go to page: of 283 pages
TOP